Hydra vulgaris (swiftwater hydra): 100213811
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Entry
100213811 CDS
T01080
Name
(RefSeq) cytotoxic granule associated RNA binding protein TIA1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmg03019
]
100213811
03041 Spliceosome [BR:
hmg03041
]
100213811
Messenger RNA biogenesis [BR:
hmg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
100213811
Spliceosome [BR:
hmg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
100213811
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_Nup35
Nup35_RRM_2
RRM_7
RBD_AKAP-17A
RRM_PARP14_3
Thioredoxin_2
RRM_YTH1
Motif
Other DBs
NCBI-GeneID:
100213811
NCBI-ProteinID:
XP_047127463
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All DBs
Position
3:complement(59325602..59357849)
Genome browser
AA seq
399 aa
AA seq
DB search
MEPSDVPDTSATILYVGNLDKRVTDVMMLNILRAGLPHVKDKILSAKMFSTADITQGMEG
YCFIQFQDNNTACQAMTFLNGRDFCGKKVKVNWATNSTNGGLPKVIGSSITIFVGDLDDD
LTDSELRQAFEPFGEILNAKVVRDAATEKSKNYGFISFTNKPDAERAIRDMHGAMLKRRP
IKTNWATRNQNSKPSQLDYDQVFKEVSESNCTVYVTNLPDRISDEVLVKHFEDCGKIVGT
PRVFDGKNFAFIRFESHAAATTAIVKGNGSELNGAILKCWWGKDSESHQAGGDSYHQRFQ
QHQQSLQPTPITDQQTYELQQQQMQQYMYNVYYQQQYYQYWMQQYQLMQQQGVQATPANY
YYNQQQQQQQPCYSPQPTTLQPVQQPVGSPPSYQQPNQQ
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggagccttcagacgtacctgacacttctgcaacaatactatatgttggaaatttagac
aaaagagtaacagatgtaatgatgttaaacatattacgagcaggtttgccccatgttaaa
gacaaaattttatcagcaaaaatgtttagtactgctgatattactcaaggtatggaaggt
tactgttttatacaatttcaagacaacaacactgcttgtcaagctatgacttttcttaat
ggaagggacttttgtggaaaaaaagtaaaagtgaattgggcaacaaattcaacaaatggt
ggtttacctaaagtaattggttctagcataacaatatttgttggagaccttgatgatgat
ctaacagacagtgaacttcgccaggcctttgagccatttggtgaaatactcaacgctaaa
gtagtcagagatgcagcaactgaaaaaagtaaaaactatggctttatttctttcactaac
aaaccagatgcagaacgagcaatacgagatatgcatggtgcaatgttaaagcgtcgacct
atcaaaactaattgggccactaggaaccaaaattcaaaaccaagtcaacttgattatgat
caagttttcaaagaggttagcgagtcaaattgcactgtgtatgttactaatcttcctgac
agaatatcagatgaagtcttagtgaaacattttgaagattgtggtaagattgttggaacc
ccacgtgtatttgatggaaaaaactttgcttttatcagatttgaaagccatgctgctgct
actactgctattgttaaaggaaatggttcggaactaaatggtgctattttgaagtgttgg
tggggaaaagattctgaaagtcatcaagctggcggtgacagttaccatcaaaggtttcaa
caacaccaacaaagtctacagcctacacccattactgatcaacaaacttatgaacttcaa
caacaacaaatgcaacaatatatgtacaatgtctactatcaacagcaatattatcaatac
tggatgcaacaatatcaactaatgcaacagcaaggtgttcaagctacaccagcaaattat
tattataatcaacaacaacaacagcaacaaccttgttactcaccacagccaactacttta
caaccagtacagcaaccagtaggaagcccaccttcttaccaacaacctaaccagcagtag
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