Hydra vulgaris (swiftwater hydra): 100214115
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Entry
100214115 CDS
T01080
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100214115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmg03019
]
100214115
Messenger RNA biogenesis [BR:
hmg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
100214115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
100214115
NCBI-ProteinID:
XP_004208725
UniProt:
T2MB27
LinkDB
All DBs
Position
2:complement(29615394..29638159)
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AA seq
499 aa
AA seq
DB search
MADVIAVANVGSVSPDEEESYLYGETSEGRQPAPTAREDEVSSRLEFISNGHIAEEDNIV
ENNSDNNAEDQNDEDGEFEESDDDEDDNIQVHIGEVNTSGTNPGVYGTPVNWKKDATGNL
KSAVLPTQGQKKIDVNAVGLINGQPIYEYDMDNDQDDKPWRKPGADISDYFNYGFTEDTW
KQYCEKQRRMRLETNRGSYIVTTTPSITPAQVEIEVLPDGRTRVKAGPPPDRKVEGSIHV
IGSDADARRKQKEDELLALALGSTRVIAPSGFPGQRPIYTALPGGTMMFNPETSQPQQIQ
SIGGGASGLPPGLQFLPHVSQSGMQGMSGGPQMYPPSMSLGDPFLHPGNMVPPGSYNFAA
PNHYESDSEYDSDNESRRHRSSRRESSRHRRHRDRSDRDRSDRSDRDRDRDRDRSKTRSD
RDHSSSRAKREHSKASSDRKKRSSRSVKQESGEGSEEPSERKSRSSRRSKHVSDEPEEKK
DITKVEGPTPSVKEEPAGD
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgttatagcagtagctaatgttgggtctgtttctcctgatgaagaagagagc
tacttatatggcgaaacttctgaaggaagacaacctgcaccaacagctagagaggatgaa
gtatcttctaggcttgagtttatttccaatggccatatcgcagaagaagataacattgta
gaaaataactcagacaacaatgcagaggatcaaaatgatgaagatggagaatttgaggaa
tctgatgacgatgaagatgacaatattcaagttcatattggtgaagtaaatactagtgga
actaatcctggtgtctatggtacacccgtcaattggaaaaaagatgccacgggtaatctg
aaatctgctgttttgccaacacaaggtcaaaaaaaaattgatgttaatgctgttggctta
ataaatggtcagccaatatatgaatatgatatggataatgatcaagatgacaaaccttgg
agaaaaccaggtgctgatatttcagattattttaattatggtttcactgaagacacatgg
aagcaatattgtgaaaaacaaaggcgcatgaggcttgaaacaaatcgtggatcttatata
gttacaacaactccatcaattacacctgctcaagttgagattgaagttctacctgatggc
agaactcgtgtaaaagctggcccaccacctgataggaaagtagaaggatcaattcatgtc
attggatcagatgctgatgcacgtcgcaagcaaaaagaggatgagctgttggcattagct
ttaggatctactcgtgtgatagctccatcaggctttccaggtcaaagaccaatttacact
gcgttaccaggaggtacaatgatgtttaaccctgaaacatcacaaccacaacaaattcaa
tctattggtggaggtgcaagtggactacctcctggtctgcagttcctaccacatgtatct
caatctggaatgcagggtatgagtggtggccctcaaatgtatcctccatccatgagtctt
ggagatccatttcttcatcctggtaatatggttcctcctggtagttataattttgcagct
ccaaaccactatgaaagtgacagtgaatatgatagcgataatgaaagtagacgtcataga
agcagtcgtcgggaaagttcacgtcataggagacatagagatagaagcgacagagatcgt
agtgatcgtagtgatcgcgaccgtgatcgtgatcgcgacagatcaaaaactcgaagtgat
cgcgatcattcttcgtcaagagcaaaaagggagcattctaaagcatcttcagacaggaag
aagagatcgtctcgctcagtcaaacaagaatccggcgaaggaagcgaggaaccttccgaa
agaaaaagtcgttcatctcgtcgttcaaaacatgtgagcgatgaacctgaagagaaaaaa
gatataacaaaagtagaagggccaacgccgagcgttaaagaagaaccagccggagattga
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