Hydra vulgaris (swiftwater hydra): 100214173
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Entry
100214173 CDS
T01080
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03008
Ribosome biogenesis in eukaryotes
hmg03013
Nucleocytoplasmic transport
hmg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100214173
03015 mRNA surveillance pathway
100214173
03008 Ribosome biogenesis in eukaryotes
100214173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmg03019
]
100214173
03009 Ribosome biogenesis [BR:
hmg03009
]
100214173
Messenger RNA biogenesis [BR:
hmg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
100214173
mRNA cycle factors
Stress granule specific factors
100214173
Ribosome biogenesis [BR:
hmg03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
100214173
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NXF_NTF2
LRR_NXF1-5
Tap-RNA_bind
TAP_C
LRR_4
LRR_8
LRR_9
LRR_6
NTF2
UBA_8
LRR_At5g56370
Motif
Other DBs
NCBI-GeneID:
100214173
NCBI-ProteinID:
XP_002156460
UniProt:
T2M473
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All DBs
Position
2:77253805..77256298
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AA seq
646 aa
AA seq
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MAFRGFKKAINDANFSVNISSNGTRSIERRLSEGGFENRRCYTDGFENKSNTSSYRGSGS
GNNGGRWKRGGSFNNRNGGGRGYGKGNFKPKHRFVDDDDDGDARMRDEEHLHRSNYGGSG
FGNKERDRDESDWFKVVVPEGKKHNRDWLLNKIKQIAKVSFEEVDYHTFKDNIVFFLKGQ
MIADAVQSASNIVTTKDGSKLFFTVRPSRPPNNNINKDEKKSSSNTSVETSPEKLEVLKT
FLGNRYDVKLVKLDLSNISSEKILFENRIEGHAGNFKFMNTIFTIINSICPQLKSLDLSH
NGITRLNTLEFLADKCPELEELNLSRNQIRFSGELTKIASNKKLKRLFLNDNPFSDNYKS
DNVAYIAEIRSKLPDIEELDGVVLPKTIKCDLLSESVIPESKPAYTENQDALKLIATFLE
NYYKIYDSSDASYRQHLLGAYHNDAVFSMSLNTGISSSSKSHSLNDYVKISRNLRRIRER
NIRHQLIKQSKLAVVAFLTELPTTTHKLDSFVLDIPVVTPSCLVFTIHGVFLEKKLNILR
GFSRVFVSVPETNSQFLIINDELHIRNITDAQLAKFEIKPIETKEQELLSETKQQELIKQ
FSLHSKMNLKWSCDCLVSNGWNFEQAATKFTELNNLGKIPPEAFVI
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atggcttttaggggcttcaaaaaagcaattaatgatgcaaatttttcagtaaatatctct
tctaacggtacaagatcgatcgaaagacgtttaagcgaaggtggatttgaaaatcgacgt
tgttatacagatgggtttgaaaataaatctaatacatcaagttatcgtgggtctggttca
ggaaataatggtggtcgttggaaaagaggaggtagttttaataatagaaatggtggtggc
agaggatatggaaaaggaaattttaaaccaaagcatagatttgttgatgatgatgatgat
ggggatgcaagaatgagagatgaagagcatttacatcgcagtaattatggtggcagtgga
tttggaaacaaagaaagagatagagatgaaagtgattggtttaaagttgtagtgccagaa
ggcaaaaaacataatcgagactggttgctaaacaaaatcaagcaaatagcaaaggtttcc
tttgaagaagttgactaccatacttttaaagataatattgttttttttcttaaaggccaa
atgattgcagacgctgttcaaagtgcaagtaacattgtcactactaaagatgggtcaaaa
ttgttttttactgtacggcctagtagacctcctaacaataatataaataaagacgaaaaa
aagtcttctagcaatacttctgttgaaacttcacctgaaaagttagaagtcttaaaaacc
tttcttggtaatcgttatgatgttaaactagtcaagttagatttgtctaatatttcaagt
gagaaaattctttttgaaaatcggatagaagggcatgctggaaattttaaatttatgaac
actatatttactattataaattctatatgccctcaattaaaatctttagatttgtcacat
aatggtattacaagattaaacactcttgaatttttagcagataagtgtccagaattagag
gagttaaatttgtcaagaaatcaaattcgcttttcaggggaattaacgaaaattgcttca
aacaaaaagttaaaaaggttgtttttaaatgataatccattttcagacaattacaagtca
gacaatgttgcctatatagcagagattcgcagtaaactacctgatattgaagagttagac
ggtgttgttttaccaaaaactattaaatgtgacttactctcagaatctgttattccagaa
tcaaaaccagcttatactgaaaaccaagatgcattaaaattgatagcaacatttttagaa
aattattataagatatatgattctagtgatgcaagttatcgccaacatttattaggagca
tatcataatgatgcggtgttttctatgtctttaaatacaggaatatcttcaagtagcaaa
agtcattcgttgaatgattatgtcaaaataagtagaaacttgcgacgaatacgtgaacga
aatataagacatcagcttattaaacaatcaaaacttgctgttgttgcttttttaactgag
ctgccaacaacaacacacaaattagattcttttgttcttgatatacctgttgtgacgcca
tcatgtcttgtattcactattcatggagtttttttggaaaagaagttgaatattttgaga
ggtttttctagagtttttgttagtgtgcctgaaacaaattcccagtttttaattataaat
gatgaacttcacattagaaatatcactgatgcacaactagctaagttcgaaataaaacca
attgagacaaaagagcaagaattgttaagtgagacaaaacaacaagaactaataaaacag
ttttctttgcactctaaaatgaacttgaaatggtcttgtgattgtttagtatcaaatgga
tggaattttgagcaagctgctacaaaatttactgaactaaataatttgggaaaaattcca
ccagaagcatttgttatataa
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