Hydra vulgaris (swiftwater hydra): 100214275
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Entry
100214275 CDS
T01080
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit B isoform X1
KO
K15213
TATA box-binding protein-associated factor RNA polymerase I subunit B
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hmg03021
]
100214275
Transcription machinery [BR:
hmg03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
100214275
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Rrn7_cyclin_N
Zn_ribbon_RRN7
Rrn7_cyclin_C
Motif
Other DBs
NCBI-GeneID:
100214275
NCBI-ProteinID:
XP_047136528
UniProt:
A0A8B7DEQ6
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Position
7:24599612..24629130
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AA seq
576 aa
AA seq
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MPICDLCDGESFYDLDGKYYCVSCSTQSQEVQVEARQEMGYGKDYCSQLQQRTGKKCGKK
NMPHNVGHTWVIYEGYQYLIKAQVEALVKMGFDAQLKNVVGDLWFAYLREMKVAFFDGEP
TTMKLQKRNHEGGRNFKKIGVIPPYIIKRKSKSYLIKEEKRRNKQGYFSLTLEGNGSEHL
KQQEEPETHCLNPELEKCFTQKHTMIFCYLGLLLLGEPILITDLLRWSNEGTLPYHKASV
VLPETMKFVFRDDAKLCRRKTPTANEMSILAKKIIEKLKLNINFSNEELKLLLTSVIVDL
EFDYAVLKIVHFLTDSVNFGFSYDVSSWNTKFVLEGYLAAFIFYATKLLYYLDGESEEND
VINVQALFRFNLTRVETWKHWMFKNTNKVKKKLHNGIPQNLNDLKYINDVSTYVDYCCKD
VFSSFQPRDCVLATHEQMSRVVRRVTSNSETKESLFKIFNASARHFNEEVDLDNIIRLPS
SFPQSHSLIGEPLYTMNDTSDSELKLEVKNCLCRNTGASKNLPSISYASLMEPNESCKYL
IDVLSKRFLIDESELQIYLKAVGLAIRNSTLNVFAY
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgcctatttgtgatctatgtgatggagaatcgttttatgatcttgatggcaagtattat
tgtgtcagttgcagtacacaatctcaggaagtacaagttgaagcaagacaagaaatgggt
tacggaaaagattattgtagtcaacttcaacaaagaactggaaaaaaatgtggaaaaaaa
aatatgccccataatgttggacacacttgggttatttatgaaggatatcaatatttgata
aaagcacaagttgaagctcttgtaaaaatggggtttgatgctcaattaaaaaatgttgtt
ggtgatttatggttcgcctatttacgagaaatgaaagttgctttttttgatggagaacct
accaccatgaagttgcaaaaaagaaatcatgaaggtggtagaaattttaaaaaaattgga
gtcatcccaccctatattatcaaaagaaaatctaaaagttatctaataaaggaagagaaa
cggagaaacaagcaaggatattttagtttaacattagaagggaatggttcggaacattta
aaacaacaagaagaacctgaaacacattgcttgaatcctgagcttgaaaaatgttttaca
cagaaacataccatgatattttgttatttaggacttttgctgctgggagaacccattctt
attacagatttactgaggtggtcaaatgaaggaactcttccttatcataaagcttcagtt
gtccttccggagacaatgaaatttgtttttagagatgatgcaaaactttgcagaagaaag
actcctacagcaaatgagatgagcattcttgcaaaaaaaattattgaaaaactaaaacta
aatataaacttttcaaatgaagagttaaagctactattaacatctgttatagttgacttg
gaatttgactatgctgttttaaagattgttcactttttgactgatagtgttaattttgga
ttttcatatgatgtttcttcatggaatacaaaatttgttttagaaggatatcttgctgca
ttcattttttatgccacaaaattgttatattatcttgatggagaatcagaagaaaatgac
gtcatcaatgttcaagccttgttccgcttcaatttaacacgtgtagaaacttggaaacat
tggatgtttaaaaatacaaataaagttaaaaagaagcttcacaatggcatacctcaaaat
ttaaatgatttaaaatatataaatgacgtttcgacatatgttgattattgttgtaaagat
gtttttagtagcttccaacctcgtgattgtgttctggccacgcacgagcagatgagtcgg
gttgtaagacgagtaacttctaacagtgaaacaaaagaaagtttatttaaaatttttaat
gcttctgctcgtcactttaatgaagaagtagatttagataacatcattagattacctagt
agttttccacagagtcacagtctaattggcgagccactatatactatgaatgatacgtcc
gattcagaactaaaattagaggtgaaaaattgcttatgtagaaataccggcgcttccaaa
aatttaccatcaattagttatgctagcttaatggagcctaatgagtcttgtaaatactta
atagatgtgttgtctaaacgatttttgatagatgaaagtgagctgcagatatatttaaaa
gctgttggacttgccatacgcaattctacgttgaatgtgtttgcttattaa
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