Hydra vulgaris (swiftwater hydra): 100215309
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Entry
100215309 CDS
T01080
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100215309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmg03019
]
100215309
03036 Chromosome and associated proteins [BR:
hmg03036
]
100215309
Enzymes [BR:
hmg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100215309
Messenger RNA biogenesis [BR:
hmg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
100215309
mRNA degradation factors
5'-3' decay
Decapping complex
100215309
Chromosome and associated proteins [BR:
hmg03036
]
Eukaryotic type
Gene silencing
piRNA pathway
100215309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_19
AAA
Motif
Other DBs
NCBI-GeneID:
100215309
NCBI-ProteinID:
XP_002164714
UniProt:
T2MGZ3
LinkDB
All DBs
Position
4:28870711..28898669
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AA seq
436 aa
AA seq
DB search
MAATATRNGLDASKTDDVKAADWKSNLKIPPKDQRIKTADVTATKGNEFEDYCLKRELLM
GIFEKGFEKPSPIQEQSIPIALAGRDIMARAKNGTGKTGAYLIPLLERVDSTKDYIQALV
LVPTRELALQTSQICKDLSNHLGTKVMVTLGGTSLKDDIMRLYQTVHVVVATPGRILDLM
KKGVADMSKCQILVMDEADKLLSMDFKKLLDSLIQMLPENRQVLLYSATFPYSVKEFKDK
YLSKPYEINLMDELTLKGITQYYAFVEEKQKVHCLNTLFSKLQVNQSIIFCNSVQRVELL
ARKITQLGYSCFYIHSRMQQSHRNRVFHDFRSGQCRNLVCSDLFTRGIDIQAVNVVINFD
FPKNSETYLHRIGRSGRFGHLGIALNLITYDDRFTLYQVEQELGTEIKPIPPSIDKSLYV
AEFQIEQTNNENKDEE
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaacagcaactcgtaatggtttagatgccagcaagacagatgatgtgaaagct
gctgattggaagtcaaatttaaaaatccccccaaaagatcaaaggattaaaacagctgat
gttactgctactaaagggaatgaatttgaagactactgtttaaagcgtgagcttcttatg
ggtatttttgaaaaaggatttgagaaaccttctccaattcaggaacaaagtatacctatt
gcattagctggaagagatataatggctagagctaaaaatggaacaggaaaaactggtgca
tatttaataccattgttagaaagagttgattcaactaaagattatattcaagcattggtt
cttgttcctactcgagagcttgcattgcaaacttcacaaatatgcaaagatctcagcaat
catcttggtacaaaagtcatggtaacattgggtgggactagtttaaaagatgacataatg
agactttatcagacagtacatgttgttgttgctactcctggaagaattcttgatttaatg
aaaaaaggtgttgctgatatgtctaagtgtcaaatacttgtaatggatgaggctgataaa
ctgttatcaatggactttaaaaagttgcttgattcattgatacaaatgcttccagaaaat
cgccaagtacttttgtattctgctacatttccatattcagtcaaagaatttaaggataaa
tatttgtcaaaaccttatgaaataaatttaatggatgagttaacattaaaaggaatcact
caatattatgcatttgttgaggaaaagcaaaaggttcattgtctaaacacgctattttct
aaacttcaagtaaatcagtctataatcttttgtaactctgtccaaagagttgaattattg
gcacgtaaaatcacgcagcttggatattcatgtttttatatacactctagaatgcaacag
tcacacaggaatagagtttttcacgattttcgctctggtcagtgtagaaatctagtttgt
tcagatttgttcacaagaggaattgatatccaagctgttaatgtagttataaattttgat
tttccaaaaaattcagaaacatatctccaccgaattggacgatcaggacgctttggccat
ttaggtattgctttaaatctaataacgtacgatgatcgctttactttgtatcaagttgaa
caagaattaggaactgaaatcaagcccataccaccttcgattgacaaaagtctttatgtt
gctgagtttcaaatagaacaaaccaataacgaaaataaagatgaggaataa
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