Hydra vulgaris (swiftwater hydra): 100215888
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Entry
100215888 CDS
T01080
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100215888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmg03019
]
100215888
Messenger RNA biogenesis [BR:
hmg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100215888
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100215888
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
TORC_N
Crescentin
Motif
Other DBs
NCBI-GeneID:
100215888
NCBI-ProteinID:
XP_047143211
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All DBs
Position
11:complement(2656172..2724780)
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AA seq
692 aa
AA seq
DB search
MADRRKLQGEVERCLKKVSEGTEAFEEIWQKVQNATNLNQKEKYEAELKREIKKLQRLRE
QLKTWATSSDVKDKDLLRENRKLIELQMERFRVVEKETKTKAYSKEGLGQAFKIDPETKE
FERCREWLNEALKNLDLQIDACESQCEALYAGSKKKKLDKDKQDRVDELAIRRDKHRYHI
SQLEHILRLLDNHSLEVDAVNKVREDVEYYIDNCQEPDFVDDEGIYDDLDLDTEIDLESS
LKFDNDKDDDQDLDSSPSSSINSGFSGVTGSPSKLMLTSPSKNTKSSSSLNLSNGGPCST
PSKRNIFSGYFNTCSNSDVPTSQDSQPHVNGLDHMDEYNSYSKNDSFTTASLTTPLSSIN
TVAAVLTQSTVSDIRPSSPGNKSISSTDQSFVRPARYQTESLKYPDRGINTSNPHWRKNN
SLNDVENFSETVVSTNSLHNSLSTNAIEQLMSSVANASLSFSSRQNSSTSLSSSLSQQPN
DIFHSHHKMEEQQVQPTLDFNMKASSLFGTLLNQNPVLSQKAIPAEMQEVCLQPVHGVAP
LGPVLLTQERIYQLKSLDASYHHLPQKQDSEKMRPYISRSAVPIANYHLHQAPPNIDSIE
FFQRLSTETLFFIFYYQEGTRAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKRITDEFEE
GTYIFFDYEKWSQRKRDGFTFEYRYLEDKDLP
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggctgatcgaaggaaactccaaggagaagtggaacggtgtttgaagaaagttagtgaa
ggtactgaagcttttgaagaaatttggcagaaagttcagaacgcaacaaatttaaatcaa
aaagaaaagtatgaagctgaattgaaacgagaaataaaaaaattacagagacttcgagaa
caattaaaaacgtgggcaacttcaagtgatgtcaaagataaagatttgttaagagaaaat
agaaaactaattgaattgcaaatggaaaggttcagagttgtggagaaagaaacaaagaca
aaagcctattcaaaagaaggccttggtcaagcattcaaaatagatccagaaacaaaagaa
tttgaaagatgcagagaatggctaaatgaagctctcaagaatttagatctgcagattgat
gcatgtgaatctcaatgcgaagcgctatatgcaggttcaaagaagaaaaaactagacaaa
gataagcaagatagagtagatgagcttgctatacgaagagataaacatagatatcatata
tcacaattagagcatattttaaggctgttagacaatcattcactggaagttgatgctgta
aataaagtacgtgaagatgttgagtattacattgacaattgtcaggagcctgattttgtt
gatgatgaaggtatctatgatgatttggatcttgatactgaaattgatttggaatcaagt
cttaaatttgataatgacaaagatgatgatcaggatttagattcatctccttcatcgtca
ataaattctgggttctcaggagtcactggttctccttcaaaattaatgttgacatctcca
tctaaaaataccaaatcttcttcttcacttaatctttcaaatggtggaccatgttctacg
ccttcaaaaagaaacatttttagtggttattttaatacatgtagtaattctgatgtacca
acatctcaagattcacaacctcatgttaatggtctcgatcatatggatgaatacaactca
tatagcaaaaatgattcttttaccactgcatcgcttacaacacctctttcttctataaat
accgtggctgctgttttaacacagtctacagtctcagatattcgaccttcaagtccaggt
aacaagagtatatcaagtacagatcaaagttttgtgaggcctgctcgataccaaacagaa
agtttgaaatacccagatagaggcataaacacaagtaatccacattggagaaaaaataat
agcttaaatgatgttgagaacttttctgaaacagttgtttcaacaaattctttgcataat
tctttatcaactaatgctattgaacagttgatgagcagtgtagcaaatgctagtctctca
ttttcttctcgtcaaaattcaagtacatcgctatcatcaagtctttcacaacaaccaaat
gatatttttcattcccatcataaaatggaggagcaacaagtacaaccaactttagacttt
aatatgaaagctagtagtttatttggaactttattgaatcagaatcctgttctttctcaa
aaagctattcctgctgagatgcaggaagtatgtcttcagccagtgcatggtgttgctcct
cttggtccagttttattaactcaggagcgtatttaccaattaaaatctctagatgcttcc
taccatcatcttccgcaaaaacaagatagtgaaaaaatgagaccttacatctcaagaagt
gcagtgccaatagcaaactatcatcttcatcaagctcctccaaatatcgactctattgaa
ttttttcagagattatcaacagagacattgttttttatattttattatcaagaaggtact
cgagctcagtatttggctgcaaaagctttgaaaaagcaatcgtggcgttttcatactaaa
tatatgatgtggttccagcgacacgaggaaccaaagagaattacggatgagtttgaagag
ggaacttatatattctttgattatgaaaaatggagtcagcgcaaaagagatggatttaca
tttgaatatcgatatctagaagataaagaccttccttaa
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