Hydra vulgaris (swiftwater hydra): 100215978
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Entry
100215978 CDS
T01080
Name
(RefSeq) general transcription factor IIF subunit 1 isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100215978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hmg03021
]
100215978
Transcription machinery [BR:
hmg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
100215978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
Motif
Other DBs
NCBI-GeneID:
100215978
NCBI-ProteinID:
XP_002160103
UniProt:
A0A8B6XJ10
LinkDB
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Position
14:complement(14611420..14633055)
Genome browser
AA seq
520 aa
AA seq
DB search
MASYLPSSIPAKQEQYSEYKLRVPRKLVKKYNVMKINSPKPLKIESIKEANMVRKTKKQL
YVEDETSNIPAFGAGSVYNYDRKEEARRKRRGYIMKEINKDDLPYALRLGGKGGKRFTGR
KEPIEHSAYYILTQCPDGVFEAVPVQAWYNFMPDINYSTLTADEVEHEFSKRDRTLSYFT
NKYKLGTSTEEEETGKKKNKEDDGGLIIHDNLEDADTDNYPDANFGSDEEDNEKKASVPV
KKNKSAFASKPKKSDDDGSDEEEETENFESKEVDYMSESSSDNEVLDIEDEPDPNKEDAA
KPKDDLNIFSDSSDEDAEDKDLNEAGKELKAILKKEIGGESSEEEVDDEDIDDEYSKSAI
FMQGGKKKKSSNSNSVQGSRSSTPIQNELASDTLNQAVKSLKEGKAGSKRAHEASLSSTQ
SKKPKIKPSGSLTVNDNKKSDMKAWGSNSPSSDCITEETIRRYLMHKPMTTTDLMRKFKT
KKTCLSKEQTVTAIAAILKKIQPHQEKIDGKLFLSIKPRK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggcttcatatttaccctcctcaataccagccaagcaagaacagtattcagagtataaa
cttcgagttccaagaaaactggttaaaaaatacaatgttatgaagataaattctccaaag
cctttgaaaattgaatctataaaagaagctaacatggttcgcaaaacaaaaaagcaactt
tatgtagaagatgagacctcaaatataccagcttttggtgctggaagtgtatataactat
gaccggaaagaagaagccaggcgtaaaagacgtggttatattatgaaagaaataaacaaa
gatgacttaccatatgctttgagacttggtggaaagggtgggaaaaggttcactgggcga
aaagagcctattgaacattcggcatattacattcttacacaatgtccagatggtgttttt
gaagctgttccagttcaagcttggtataattttatgcctgatatcaactactccacattg
actgctgatgaagtagaacatgaattttcaaagcgtgatagaacacttagctattttaca
aataaatacaagttaggtacatccactgaagaagaagaaactggaaaaaagaaaaataaa
gaggatgatggcggtttaattattcatgataacttggaagatgctgacacggataactat
ccagatgctaattttggttccgatgaagaggataatgaaaaaaaagcatcagtgccagta
aaaaagaataaaagtgcttttgcaagtaaaccaaaaaaaagtgatgatgatggatctgac
gaagaagaagaaaccgaaaattttgaatctaaagaagttgattatatgtctgaatcttca
tctgataatgaggttcttgacattgaagatgaaccagaccccaataaagaagatgctgca
aagcctaaagatgaccttaacattttctctgattctagtgatgaagatgctgaagataaa
gatcttaatgaagctggaaaggagcttaaagctattttaaaaaaagagatcggtggagaa
agcagtgaagaagaagtagacgatgaagatatagacgatgaatactcaaaatcagcaatt
ttcatgcaaggtggaaagaaaaaaaagagcagtaattctaactcagttcaaggaagtcgc
tcatcaactccgattcaaaatgagctagcatctgatacacttaatcaagctgtaaagtcg
cttaaagaaggtaaagctggttctaaacgtgcacatgaagcttcattatctagtacccaa
tctaaaaaaccaaagatcaagccatctggaagtctcactgtaaatgataataaaaagtca
gacatgaaagcttggggctctaatagtccatcatcagattgcatcacggaagaaactatt
cgtcgatatttgatgcataaacctatgactactactgatttaatgaggaaatttaaaaca
aaaaagacttgtttaagtaaagaacaaactgtaacagctattgctgcaattttaaaaaaa
attcaacctcatcaagaaaaaattgatggcaaacttttcttgtccattaaaccaaggaaa
taa
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