Hydra vulgaris (swiftwater hydra): 101235711
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Entry
101235711 CDS
T01080
Name
(RefSeq) nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03013
Nucleocytoplasmic transport
hmg03015
mRNA surveillance pathway
hmg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101235711
09122 Translation
03013 Nucleocytoplasmic transport
101235711
03015 mRNA surveillance pathway
101235711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmg03019
]
101235711
03041 Spliceosome [BR:
hmg03041
]
101235711
Messenger RNA biogenesis [BR:
hmg03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
101235711
Spliceosome [BR:
hmg03041
]
Common components
Common spliceosomal components
Cap binding complex
101235711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
SPATA1_C
TACC_C
Motif
Other DBs
NCBI-GeneID:
101235711
NCBI-ProteinID:
XP_047140746
UniProt:
A0A8B7DP90
LinkDB
All DBs
Position
9:23192611..23321096
Genome browser
AA seq
812 aa
AA seq
DB search
MSDHRKRYRDHDSEVSGSRERKRTRVGPLDVEDRLESLITRVGEKSTSSLESNLEGLANV
LIADIANYKQRILQILCTCVTNLPEKGTIYATLVGLLNEKSFDFGGEFLELTMCNLKEVI
FSEQWDRARLMVRFLSDLINCNFLVAASLISFLETLMNAALQIGVPQVRSDWFVYSILSS
LPWCGKELSTKKPNEFGRLLESIEVFISKRNKLHSKALRVWSSDNPHPQEEYLDCLWEQI
KTMKDDDWQEKHIRRPYQAFHSVLCKALPHPIPLFDVPPHTEISIYPLPSVIFRMFDYAD
APEEKPIPGAHAIERYLVEESIWRIICTHYKDRKECANQLINCPVRNKVPIEYIITEVVF
GAMFRLPENEHLFLFYGSLIIELCKINPQTMPGVIAQAVELLFDRLPTMNVTCVDRFIDW
FSYHLSNFQYKWTWDDWIQYADSSASDDQRCRFIIEVLAKCQRSTFHENLLEILPNSLLP
LLPEPTQGYFRYECAEADEPGHTTVRKLIDGIKSKKDTQSLLTTLYEIGPSEKSFYENDD
LVGPYIDPSISALRIECFILTILRAGLKSISHTYSALTKFQPMFTELITNKSEQLHVLRT
VREFWGRNPLMVLIVIDKMVKLQYIQCSTVINWIFSKEMENEFMRYTTWELIHNTLKKMM
KHKSKVKKDLEDAHERLDVLIDKAKREEQKHGESEDDEAYNTSPLEIERRQEEIEELTQK
VETAKKDQKELFLIVFQRFTMIITEHVAECEREGRKIVNSWYRYTLQRLQEIFLMYHAEI
DQYSDKMEKLIFTPDIAPHILEVFRRYKSLRS
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatcatcgaaagagatacagagatcatgatagcgaagtttcaggatctcgtgaa
cgaaagcgaactcgagttggtcctttagatgttgaagatcgtttagaatcacttattact
cgtgttggagaaaagagtacatcatctttggaaagtaacttagaaggtctagctaatgta
ttaatagctgatattgcaaattacaaacaaaggattttgcaaattctttgcacatgtgtt
acaaatttaccagagaaaggaactatatatgcaacattagttggattgctcaatgaaaaa
agttttgactttggaggagagtttcttgaattaacaatgtgtaatttaaaagaagttatt
ttcagtgaacaatgggatcgagctcgtcttatggtgcggtttttatctgacttgataaac
tgcaattttttggttgcagcatcgttaataagttttcttgaaactttgatgaatgctgct
ttacaaataggagtgcctcaggttcgatcggattggtttgtgtatagtattctgtcatct
ttaccatggtgtgggaaagagctttcaactaaaaagcctaatgaatttggacgattactt
gaatcaatagaggtttttataagtaaacgcaacaaacttcatagtaaagcacttcgagtt
tggtcgtctgataatcctcaccctcaggaagaatatttagattgtttatgggagcaaata
aaaactatgaaggatgatgactggcaggaaaaacacattagaagaccatatcaagctttt
catagtgtactatgtaaagctcttcctcatccaataccattgtttgatgttcctccccac
actgaaataagcatatatcctttaccaagtgttatcttcagaatgtttgactatgctgat
gcacctgaggaaaaaccgattcctggtgctcatgcaatagagcggtatttggtggaagaa
agtatctggcgtattatttgtacacattataaggatagaaaggaatgtgcaaatcagtta
ataaattgtcctgtacgaaataaagttccaattgaatatataatcacagaggttgtattt
ggcgccatgtttcgattacctgaaaatgagcatctatttttattttatggttcacttata
attgaactttgtaaaataaatccacaaacaatgcctggagttattgcgcaagctgttgaa
ttgttatttgacagattgcccaccatgaatgtaacatgtgttgatcgatttattgactgg
ttttcatatcatctgagtaactttcaatataaatggacgtgggatgattggattcaatat
gctgatagcagtgcaagtgatgaccaacgttgtaggtttattatcgaagtgcttgcaaaa
tgtcaaaggagtacatttcatgaaaatttattagaaattcttcctaattcacttttacca
ttacttcctgaacctacgcaaggttactttagatacgaatgcgctgaagcagatgagcct
ggtcacacaacagttcgcaaattgattgatggaattaaatctaaaaaagacactcaatct
ttgcttacaacattatatgaaattggtccttcagaaaagtctttttatgaaaatgatgat
cttgttggtccatatattgatccaagcatatcagcacttcgcattgagtgttttatcttg
actatattacgagctggattaaaaagcataagtcacacatacagtgcattaaccaagttt
caaccaatgtttacagaacttattacaaacaagtcagaacaattacatgtcctaagaact
gtcagagaattttggggaagaaatccattaatggttcttattgtcattgataaaatggta
aaacttcaatatattcagtgcagcacagttattaattggattttttcaaaagaaatggaa
aatgaattcatgagatatacaacctgggagctgatacacaatactttaaaaaaaatgatg
aaacataaatcaaaggtaaaaaaagatctagaagatgcacatgaacgtttggatgtacta
attgataaagctaaacgagaggagcaaaagcatggagaatccgaggatgatgaagcatat
aatacttctcctttggaaatagaacgtcgacaggaagaaatcgaagaattaacacaaaaa
gttgagactgctaagaaagatcagaaagagctatttttaatagtttttcaacggtttaca
atgatcatcacagaacatgtcgctgaatgtgagcgagaaggcaggaaaattgtgaattct
tggtataggtatactttacaaagattgcaagaaatatttctcatgtatcatgctgaaatc
gatcaatactcagataaaatggagaaattaatttttacgccagacatcgctcctcacatt
cttgaagtatttaggcgttacaagtctctacgttcttga
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