Hydra vulgaris (swiftwater hydra): 101236243
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Entry
101236243 CDS
T01080
Name
(RefSeq) probable replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03030
DNA replication
hmg03410
Base excision repair
hmg03420
Nucleotide excision repair
hmg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101236243
03410 Base excision repair
101236243
03420 Nucleotide excision repair
101236243
03430 Mismatch repair
101236243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hmg03032
]
101236243
03036 Chromosome and associated proteins [BR:
hmg03036
]
101236243
03400 DNA repair and recombination proteins [BR:
hmg03400
]
101236243
DNA replication proteins [BR:
hmg03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
101236243
DNA Replication Termination Factors
ELG1-RFC complex
101236243
Chromosome and associated proteins [BR:
hmg03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
101236243
DNA repair and recombination proteins [BR:
hmg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
101236243
Check point factors
HRAD17(Rad24)-RFC complex
101236243
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
DNA_pol3_delta2
AAA_assoc_2
AAA_22
AAA_11
AAA_5
AAA_7
AAA_23
AAA_16
Rad17
AAA_24
ATPase_2
AAA_19
AAA_14
RuvB_N
DUF815
RCF1-5-like_lid
AAA_30
RNA_helicase
bpMoxR
AAA_28
Rep_fac_C
SLFN-g3_helicase
TniB
Mg_chelatase
Motif
Other DBs
NCBI-GeneID:
101236243
NCBI-ProteinID:
XP_047140881
LinkDB
All DBs
Position
9:3839634..3840644
Genome browser
AA seq
299 aa
AA seq
DB search
MNITQTPNLKPDRSKLPFVERFRPNVLDGIMSHCENIRVLKIYLNRPDIPHLLFYGPPGT
GKTSTIEAFVNELYGHDLVEFMTMNINASEERGIEVVRNKIKDFVSTDPIRFGKNGSPKY
KFVILDEADAMTLDAQCMLKQVIEYYTDNARFCLICNCVKKIEPAIQSRCSVFNFPPMDY
DSVRKKIRMIAKETNFTITNDGIQTLWKLSKGDMRKVLHMLQVIGINNKKIDSDKITKIK
NYPTNNEIDNIYETLLKDKKMDPIKGANLLTDLRDSEMNLIVTSDTDIQLTSIVSIFTK
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcacacaaacccctaatttgaagccagatagatccaaactcccttttgttgag
agatttcgacctaatgtacttgatgggataatgtcacattgtgaaaatatcagagtttta
aaaatttatctaaatagacctgatattccacacttactattttatggccctccgggaaca
ggtaaaacatcgactattgaagcttttgttaatgagctatatggacacgatttggtcgaa
tttatgacgatgaatatcaacgcatctgaggaaagaggcattgaagttgtgcgtaacaaa
attaaagattttgtgtcaacagatccaattagatttggaaaaaatggttcgccaaaatac
aagtttgttattttggatgaggctgatgcaatgactcttgatgcacaatgtatgttgaaa
caagtcattgagtattatacagataacgcaagattctgcctaatttgtaattgtgtcaaa
aaaattgaacctgcaattcaatcaagatgttctgtttttaattttccgcctatggattat
gacagcgttcgtaaaaaaattagaatgattgctaaagagactaattttactatcactaac
gacggtattcaaactttatggaaattatcaaaaggcgatatgagaaaagttcttcatatg
ttacaagttattgggattaacaacaaaaaaatcgactctgataaaataacgaaaattaaa
aactatccaacaaataatgagatagacaacatttatgaaacattgttaaaagacaaaaag
atggatccaattaaaggagccaatttacttactgacttgcgcgacagtgaaatgaatctt
attgtaacatcagatacggacatccaattaacaagtattgtatcaatctttaccaaataa
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