Hydra vulgaris (swiftwater hydra): 101236243
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Entry
101236243 CDS
T01080
Symbol
LOC101236243
Name
(RefSeq) replication factor C subunit 5-like
KO
K10756
replication factor C subunit 3/5
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03030
DNA replication
hmg03410
Base excision repair
hmg03420
Nucleotide excision repair
hmg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101236243 (LOC101236243)
03410 Base excision repair
101236243 (LOC101236243)
03420 Nucleotide excision repair
101236243 (LOC101236243)
03430 Mismatch repair
101236243 (LOC101236243)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hmg03032
]
101236243 (LOC101236243)
03036 Chromosome and associated proteins [BR:
hmg03036
]
101236243 (LOC101236243)
03400 DNA repair and recombination proteins [BR:
hmg03400
]
101236243 (LOC101236243)
DNA replication proteins [BR:
hmg03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
101236243 (LOC101236243)
DNA Replication Termination Factors
ELG1-RFC complex
101236243 (LOC101236243)
Chromosome and associated proteins [BR:
hmg03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
101236243 (LOC101236243)
DNA repair and recombination proteins [BR:
hmg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
101236243 (LOC101236243)
Check point factors
HRAD17(Rad24)-RFC complex
101236243 (LOC101236243)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
Rep_fac_C
DNA_pol3_delta2
AAA_lid_RFC1
AAA_assoc_2
AAA_22
AAA_11
AAA_7
AAA_23
Rad17
AAA_5
ATPase_2
AAA_19
AAA_16
AAA_24
RuvB_N
DUF815
RCF1-5-like_lid
RNA_helicase
AAA_30
bpMoxR
AAA_28
Mg_chelatase
Motif
Other DBs
NCBI-GeneID:
101236243
NCBI-ProteinID:
XP_065639478
LinkDB
All DBs
Position
13:3559638..3560648
Genome browser
AA seq
336 aa
AA seq
DB search
MNITQTPNLKPDRSKLPFVERFRPNVLDGIMSHCENIRVLKIYLNRPDIPHLLFYGPPGT
GKTSTIEAFVNELYGHDLVEFMTMNINASEERGIEVVRNKIKDFVSTDPIRFGKNGSPKY
KFVILDEADAMTLDAQCMLKQVIEYYTDNARFCLICNCVKKIEPAIQSRCSVFNFPPMDY
DSVRKKIRMIAKETNFTITNDGIQTLWKLSKGDMRKVLHMLQVIGINNKKIDSDKITKIK
NYPTNNEIDNIYETLLKGNFTNSVSLLKNITKQKHYSFCDIIAELTLKISKSIIDKKMDP
IKGANLLTDLRDSEMNLIVTSDTDIQLTSIVSIFTK
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcacacaaacccctaatttgaagccagatagatccaaactcccttttgttgag
agatttcgacctaatgtacttgatgggataatgtcacattgtgaaaatatcagagtttta
aaaatttatctaaatagacctgatattccacacttactattttatggccctccgggaaca
ggtaaaacatcgactattgaagcttttgttaatgagctatatggacacgatttggtcgaa
tttatgacgatgaatatcaacgcatctgaggaaagaggcattgaagttgtgcgtaacaaa
attaaagattttgtgtcaacagatccaattagatttggaaaaaatggttcgccaaaatac
aagtttgttattttggatgaggctgatgcaatgactcttgatgcacaatgtatgttgaaa
caagtcattgagtattatacagataacgcaagattctgcctaatttgtaattgtgtcaaa
aaaattgaacctgcaattcaatcaagatgttctgtttttaattttccgcctatggattat
gacagcgttcgtaaaaaaattagaatgattgctaaagagactaattttactatcactaac
gacggtattcaaactttatggaaattatcaaaaggcgatatgagaaaagttcttcatatg
ttacaagttattgggattaacaacaaaaaaatcgactctgataaaataacgaaaattaaa
aactatccaacaaataatgagatagacaacatttatgaaacattgttaaaaggcaatttt
acaaatagcgtctctcttttaaaaaatattactaaacaaaaacactattcattttgtgat
attattgcggaacttactttaaaaattagcaaatcaataatagacaaaaagatggatcca
attaaaggagccaatttacttactgacttgcgcgacagtgaaatgaatcttattgtaaca
tcagatacggacatccaattaacaagtattgtatcaatctttaccaaataa
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