Hydra vulgaris (swiftwater hydra): 101236855
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Entry
101236855 CDS
T01080
Name
(RefSeq) CLIP-associating protein 1 isoform X1
KO
K16578
CLIP-associating protein 1/2
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hmg03036
]
101236855
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
hmg04812
]
101236855
Chromosome and associated proteins [BR:
hmg03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
101236855
Cytoskeleton proteins [BR:
hmg04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
CLIP-associating proteins
101236855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLASP_N
CEP104-like_TOG
XMAP215_CLASP_TOG
HEAT
TOR1L1_N
HEAT_2
HEAT_EF3_N
Cnd1
HEAT_EZ
HEAT_ECM29
TPR_Trm732_C
DOG1
HEAT_DAAF5
Motif
Other DBs
NCBI-GeneID:
101236855
NCBI-ProteinID:
XP_047137233
LinkDB
All DBs
Position
7:50107189..50179493
Genome browser
AA seq
1384 aa
AA seq
DB search
MANESIDYYITALQTQDTHKRLKVAENLTKYLQSSAFNQLDSGQLIDGLMSWILSSNFKV
SSQGLEILGLLAYQMGPSFKTHINSTLATVVDRLGDSKQLVRDQALDVLFKYMDPVSKPQ
AIFDLLVPFFNHKNWRVREVLMICLTQAINRFGASSMQISKFTPCLVKLLSDPTGQVRDT
AISTLVEIYRHVGDRLRADLLKYNMQESKLTSLFGKFDQLSKSGDFVDHGCNEPSNEQNS
PPQKKKPLKGSVNRSTSFSPGDKKKPSVEKMNAVSSGAVDETDFVTAWEEVPEPKIFSIK
EFPNELDRINSVLSDPNNDWEKRVDALRALRSLVKISNQVDQFTKIIKDLENALRVSVKD
LRSSVVREACVTLSYMSFIMESKFDYLAECLLPSLIVLIPNTVKIMSTSAHAAMRLIIKH
TPSPRLIPLIVSNLLTAKSKDIRRRCAEYVGLLLEIWDTSVIKNHTALLEEAIKKGIADA
DSETRAAVRRVYWHFADHYRDKADAMMQQFDSSKQKLLLSDKNLISTGSSGGNDVLKQNK
PVRLISSSETLNKIKSQPTKNSASVTTVNYTNKTNKQTQDTVMGPPMSMPPMQRSASQME
YNSRTPKMTSRQKSYDDLKRTNAKAVRQEGRSRYAAPKNTSQPSSRNSSPKRAPSFTRER
SEDYMNVFSPQKSRIPTPSKPKSKSTSHHSSRDTSPSRISGDLKNGNKSADDVNEELLWD
ALKKGGRRERQNSQSSLNGGGSDESDASSMSSLVNRPVVTQDYDEIINLMQQDSSNSKRD
GLASLQYFLYGTNSMTTEQVIRLKETLNRYFAEPNSKIYSTFLSVLSEFVVQYKRDLKDW
LFILLTRLLQRISTDILSSSQKKIARVLDVVRDSYPYDQQFHIITRYITDNTQTPTLKLK
VSLLEYLRGLIHNMDPSDFVNTAPIRLAVSRIVTWISEPKSSDVRKEATLVIIALFQLNS
PEFSSMLSGVPNSIHEGATRVIKMHLRQASGFNSRDVITPSDEAYTPIKTSSSDSSVFRP
SSSLKSPKSQDYSSGILNRNLKENNSDNEPPGKTMPACKLTYDEIDSPITQLNSSNPPQS
QLYSYGTHYTTTEHSSPVWLSKDMTIQYNPKQYEDSMLDYRYQNNSISPEMNKMNKIIGG
VEQMHLSGEKNDSGSANLVNEIFTILSAPPNVTNSEDIKNAMQELHKLLKESNKNLTTTK
LKALLPIILEMLQHQEAAIRCLAARSLKEIALNYPALYRSDLKGFLLPLLESEADVQREV
SKTVVECSSIVCQIIPLSEIISVVAPLCGKALFPANLSAIKLLNSISDTCDSEELRKHLD
VVITNLLVAYDHIESSVRKAAVFCLVSVHNQAGANVVLPYFKDLAGSKMKLLNLYIRRSQ
SSNV
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatgaaagtatagattattatattactgcattacaaacacaagacacacacaaa
agacttaaagttgcagagaatttgacaaaatatttgcaatcttcagcatttaatcaactt
gattctggacaacttatcgatggattaatgtcatggatactgagtagcaattttaaggtg
tcaagtcaaggattagagatattaggtttattggcatatcaaatgggaccttcttttaaa
acacatattaattctactctagcaacagttgtcgacagacttggggattcaaaacaattg
gtacgagatcaagctttggatgttctttttaaatatatggatcctgtatctaaaccacag
gctatttttgatcttctagtgccattttttaatcataaaaattggagagtcagggaagtt
ttaatgatttgtttaacacaagctattaataggtttggtgcatcatcaatgcaaatcagt
aaatttacaccatgtcttgtaaaattgttaagtgatcctactggtcaggttcgtgacact
gcaataagtactttagttgagatttatagacatgttggagatcgtttgagagcagatctt
ttgaaatataacatgcaggaatcaaaattaactagtctatttggtaagtttgatcaatta
agtaaatctggagactttgttgaccacggttgcaatgagccaagtaatgaacaaaactct
ccacctcaaaaaaaaaagcctttaaagggttcagtcaatagaagtaccagttttagtcct
ggagacaagaagaaaccaagtgttgaaaagatgaatgctgtatcatcaggtgctgtagat
gaaactgattttgtaacagcttgggaagaagttccggaaccaaagatattttcaataaaa
gaatttcctaatgagcttgacagaataaattcagttctgtctgatccaaataatgattgg
gaaaagagagttgatgcacttcgtgcactgcgctcattagtgaaaatttcgaatcaagtt
gatcaatttacgaagatcattaaagatcttgagaatgctcttcgagtttcggtgaaagat
cttcgctcaagtgttgttcgagaagcttgtgtcactctaagttatatgtcgtttatcatg
gagagcaaattcgattatcttgctgaatgcctgcttccatcattgattgttttaattcca
aatacagtaaagataatgtcaacttcagcacatgcagcaatgagattgataattaaacat
acaccaagtcctcgactaattccattaatagtctctaatttgttgacagcaaaatcaaaa
gacattcgaaggaggtgcgctgaatatgttggacttttactagaaatttgggatacatct
gtaataaaaaatcatactgctttactggaagaagcaatcaaaaaaggaatagctgatgct
gattccgaaactagagcggcagtacgaagagtatattggcattttgcagatcactatcgt
gacaaagctgatgccatgatgcagcagtttgattcatcaaaacaaaaacttcttttaagc
gacaaaaatcttattagcacaggatcaagtggtggaaacgatgtattaaaacaaaacaaa
ccagttcgattaataagttcttcagaaacattaaataaaattaaaagtcaaccaactaaa
aattcagcatcagttacaacagttaactacacaaacaaaacaaataagcaaacccaggac
acagtcatgggtccaccaatgtctatgcctccaatgcaaagatcagcaagtcaaatggaa
tataactctcgcactcctaaaatgacttcaagacaaaagtcttatgacgacttaaaacgc
acaaatgcaaaagctgtaagacaagaagggaggtcaagatatgctgcacctaaaaacaca
tcgcaaccttcaagtcgcaatagttcaccaaagcgtgcaccttcatttacaagagagcga
tcagaggattacatgaatgtttttagtccacaaaaaagtcgaataccaactcctagcaag
cctaaatccaaatcaacatctcatcattcaagccgtgatacaagcccatccagaatttct
ggtgatttaaaaaatggaaataaatcagcagatgatgtcaatgaagagttattgtgggat
gcactgaaaaaaggaggaaggagagaacgtcaaaattctcaatcttctctgaatggaggt
ggaagtgacgagagtgatgcatcaagtatgtcttcacttgtaaatcgacctgttgttaca
caggactatgatgaaattataaatcttatgcaacaagattcaagtaattcaaaaagagat
ggcttagcttcgttgcaatatttcttatatggaaccaattcaatgacaacagaacaagtg
attcgtttaaaagaaacattaaatagatattttgcagaacccaattctaaaatttacagt
acttttttaagcgtgttaagcgagtttgttgtacaatataaaagagatcttaaagattgg
ttatttattttacttactcgtcttttgcaacgtatatcaacagatatactttcatcgtca
caaaaaaaaatagcaagggttcttgatgttgtcagagattcttatccatatgaccagcaa
tttcatattattacaagatatatcaccgataacactcaaactccaacattaaaacttaag
gtatctttacttgaatacctacgtggtttaattcataatatggatcccagtgattttgtg
aacactgctcctattcgactggcagtgtctagaatagttacttggatttcagaaccaaag
agctcagatgttagaaaggaggctactttggtaatcatagctttgtttcaattaaattct
ccggaattcagtagtatgctttctggtgtacctaattcaattcatgagggggctacacgt
gttataaagatgcacttaagacaggcaagtggttttaactctcgagatgtgatcactcca
agtgatgaagcatacacaccaatcaaaactagttctagtgactcgtctgtttttcgacca
tcttcctctttgaaatctcctaaatctcaagattactcttctggaatattaaatagaaat
cttaaagaaaacaacagtgataatgaacccccaggtaaaacaatgccagcatgcaaactc
acatatgatgagattgattctcctataactcaattaaattcaagtaaccctcctcaatcg
cagctgtatagttatggtacacattatacaacaacagaacattcgtcaccagtttggttg
tctaaggacatgacaatccagtacaacccaaaacagtatgaagacagtatgttagactat
aggtatcaaaataattctatttctcccgaaatgaataaaatgaacaaaattattggaggt
gtggaacaaatgcatctttcaggagaaaaaaacgattctggatcagcaaatcttgtaaat
gaaatatttacaattttgtctgctcccccaaatgtaactaattcagaagatattaaaaat
gctatgcaagaacttcacaagttgttaaaagaatccaacaaaaatctcactactacaaaa
cttaaagctttacttccaattatattagagatgttacagcatcaggaggcagcaattcgt
tgtttagctgcacgctctctaaaagaaatagctttaaactatcctgctttatatagaagt
gacttaaaaggatttttattacctcttcttgaatctgaagctgacgttcaaagagaggta
tcaaagacagttgttgaatgtagctcaattgtttgtcaaattattcctctgtcagagatc
atctctgttgttgctcctctatgtggaaaagctttattccctgcaaatctttcagctatt
aaacttctaaattcaatatcagatacttgtgacagtgaagagctgagaaaacatttagat
gtggttattacaaatcttctggtggcttatgatcatatagaaagcagtgtacgaaaagct
gcagttttttgtcttgtgtctgttcacaatcaagctggtgctaatgttgttttaccatat
tttaaagacttggcaggttccaagatgaagttgttgaatttgtacattagacgctctcaa
tcttctaacgtttag
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