Hydra vulgaris (swiftwater hydra): 101237000
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Entry
101237000 CDS
T01080
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmg03019
]
101237000
04121 Ubiquitin system [BR:
hmg04121
]
101237000
Enzymes [BR:
hmg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101237000
Messenger RNA biogenesis [BR:
hmg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101237000
Ubiquitin system [BR:
hmg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
101237000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
SGL
DUF5128
zf-B_box
zf-C3HC4_3
zf-C3HC4
PhoX
Tnp_zf-ribbon_2
Motif
Other DBs
NCBI-GeneID:
101237000
NCBI-ProteinID:
XP_012560979
UniProt:
A0A8B7DRY6
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All DBs
Position
1:complement(26340136..26343560)
Genome browser
AA seq
853 aa
AA seq
DB search
MATFHVRYQQPLQHETENADIECKNCKSKNNNLKILPCLHSFCCGCLQSYIIRNVLNEFS
LRCPTCRRDVQLDSSGINSLPSNLFFQDLFSEVVVLQNGEQPYNEQSNLALPWVKYRHKN
KSNLKTSQDHQLVEFSTSDNGDLTKYTCKKCSDYLCENCSYAHRNINSNKVVDLHQNLSL
LKIECNDNIKITQPELTRSTINSFITNNPLQSANYFDTLARENLNNHFSPPVYRVSTSIA
LPPSSSVPSLLSSIPSGGRSPVFCELHGREYMFFCNFCFIPVCRDCMNNDHNGHNISMLN
TTTTNSSISQVDNKKSSSDLVSDLRKEIKLMEDSLCNIQTFVDKVETKSKAISSDIRITV
KRHIIAMEEREKELLLQVEKIRQVKRKALLVQAEQMKLSISKLKIATDSFEIEQKLSDAN
EVKTMLTSLQNQRLLRHPWEDDTISFTPPDIALQTALASMGFISSSAYPPLCTAVGEGLR
RGIRGKLTMFTIIAKDHHGANRCVGGDVVRVIISTPDGKQIYGDVYDRQNGNYTVSYRPY
VEGDHQVYATIREQPIMDSPFLMTVKSGRNYSGIGQSYFQFGSEGEEGGQLCRPWGICCD
KDGNIIVADRSNNRIQVFDQKGKFISMFGSAGFRNGQFDRPAGVCVDNQNRIIVADKDNH
RVQIFKLDGSYILKFGDRGNKNGQFTYPWDVAANSQGQILVSDTRNHRIQLFSSDGTFLN
KYGFDGPLWKHFDSPRGVAFNHEGHMVVTDFNNHRLLVIHQDFQTARFLGTEGSNNGQFM
RPQGVTIDHEGNIIVADSKNHRVQIFQPNGNFYTKFGVFGTMVGQLDRPSGLCVSPDGII
LVVDFGNNRIQAF
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggccacatttcacgtaagatatcaacagcctcttcaacatgaaacagaaaatgcagat
attgagtgcaaaaattgcaagtcaaagaacaacaacctaaaaatattaccatgtttgcat
tcattttgttgtggctgccttcaaagttatattattcggaatgtactgaacgaatttagc
ttacggtgtccaacatgtagacgtgatgtgcagttagatagttctggcataaattcgtta
ccttctaatttattttttcaagatttattttcagaagtggttgttctacaaaatggagaa
cagccatataatgaacaatcaaatttagctttaccatgggtaaagtatcgtcataaaaat
aaaagcaacttgaaaacatctcaggatcatcagttagttgagttttccacttctgataat
ggtgatctgaccaaatatacttgcaaaaaatgtagtgattacctgtgtgagaattgtagt
tatgcacatcgaaatataaactcaaacaaagttgtcgatttgcatcaaaatctttcttta
ttaaaaattgaatgtaatgataatataaagattactcagcctgaattaactcgatctact
ataaattcttttataacaaacaatcccttgcaatcagctaattattttgatactttagct
agggaaaatttaaataatcatttttctccaccagtttatagagtttcaacttcaatagca
cttccaccttcatcaagcgttccttctctactttcatcaataccatcaggaggtcgatca
cctgtattttgtgaattacacggaagagagtatatgtttttttgcaatttttgttttata
cctgtatgtcgagattgcatgaataatgatcataatggacataatataagtatgttaaac
accaccaccactaattcatctataagtcaagtagacaataaaaaaagtagttcagattta
gtatctgatctacgcaaagaaattaagctcatggaagattcattgtgcaatatacaaact
tttgttgacaaagttgaaactaaatcaaaagctatttcaagtgatattagaattacagtt
aaacgtcacataattgcaatggaagaacgcgaaaaggagttattgctacaagttgaaaaa
attcggcaagtaaaaaggaaagcattgttagttcaagctgagcaaatgaaactttcgatt
agtaaattaaaaatagctacagactcttttgaaatagaacaaaaattgtcagatgcaaat
gaggtgaaaacaatgctgacaagtttgcaaaatcaaaggttgttaagacatccatgggaa
gatgatacaatatcgttcacaccaccagacattgcacttcagacagctttggcttcgatg
ggttttattagcagtagtgcttatcctcctttgtgcacagctgttggtgaaggattgcgt
cgtggtatacgaggcaaattgaccatgtttaccattattgcaaaagatcatcatggtgcc
aatagatgcgttggaggagatgttgttcgagttataattagtacacctgatggaaagcaa
atttacggtgatgtgtatgacagacagaatggaaattacacagttagctatcgaccgtat
gttgaaggagatcatcaggtttatgcgacaattagagagcaacccattatggattctcca
tttttaatgactgtaaagagtggaagaaattattctggtattggtcaatcatattttcaa
tttggatctgagggtgaagagggtggtcagttatgcagaccttggggtatttgttgtgat
aaagatggtaatatcattgttgcagacagaagtaataatagaatacaagtgtttgatcaa
aaagggaagttcattagtatgtttggttcagctggttttagaaatggacagtttgatcga
cctgctggggtttgtgtcgacaatcagaatagaataattgttgcagataaagataaccat
agagtacagatattcaagcttgatggtagttatattttaaaatttggtgataggggaaat
aaaaatggtcagtttacttacccctgggatgtagctgcaaatagccaaggacaaattctt
gtatcagatactcgtaatcatagaatacagctcttttcttcagatggtactttcctgaat
aaatatgggtttgatggccctttatggaaacactttgattccccaagaggtgtggccttt
aatcatgaaggacatatggttgtaactgatttcaataaccatcgccttcttgtgattcat
caggattttcaaactgctcgatttttaggaacagagggatcgaataatggacaatttatg
cgaccacaaggtgttactattgatcatgaaggaaatataattgttgctgattcaaaaaat
catcgcgttcaaattttccaaccaaatggaaatttttataccaaatttggagtatttggt
acaatggttggacagcttgatcgcccttctggactgtgtgttagtcctgatggaataatt
ttagttgttgattttggtaataatcgtatacaagcattttaa
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