Hydra vulgaris (swiftwater hydra): 101238227
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Entry
101238227 CDS
T01080
Name
(RefSeq) transducin beta-like protein 3
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
101238227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hmg03009
]
101238227
Ribosome biogenesis [BR:
hmg03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
101238227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Utp13
EIF3I
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_DCAF4
ANAPC4_WD40
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_HPS5
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_NUP159_NUP214
WD40_like
Beta-prop_DCAF12
WD_LRWD1
Beta-prop_WDR19_2nd
Beta-prop_WDR35_TULP_N
Utp12
UTP15_C
WDR54
NTNH_C
Motif
Other DBs
NCBI-GeneID:
101238227
NCBI-ProteinID:
XP_047145085
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All DBs
Position
12:29974160..30032683
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AA seq
776 aa
AA seq
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MVTDPLRKNYELESTVKSFYTGGTSFLSKNGTEMLCTCGDVVNALDLSNGERIYQLKDDG
SDITCFAASPDGKILITACKALLLHQFSLSLRTFTRRWKVSHKTQVLAMTFDSSSTLLAT
GSSDTTIKIYDVVKMYYTHNFKGSQSSVSVLKFHPHTEKLSLISASVDGKIYMWDLQTSK
CVSVLDGHYSPVTSLEFSQDALVSAGRDKILVFWDLNSRKQIRTVPTFEVIESLVVVPKE
KSLFKNTSMKDTEFVVTAGENGSLRFWSLIGGFCAYTSQKENSESNIVQLHFDSNSEKLI
VVTEEHNIIVYNPISLKPILKFVGHFDEILDLKFFGENEEYIGMATNSNQINIMQRGLLS
SHMLKGHSDIVLSIDVSFNGKYLASSSKDNTIRVWCKDEEEDKFCCVAVGNGHTHAVSSI
SWPVLSTDYLVTGSQDLTLKCWKLPSLLLKTECVNLHVKWTEKAHDKDVNVVRISPNDKI
LVSGSQDKMAKVWKFKSGTLLGTLRGHKRGIWCACFSPVDQCIATGSADSTIKLWTLSDF
TCVKTFEGHSNSVLKVHFLLKGMQVVSSGSEGLIKVWNIRNNECISTVEAHDEKIWCLAV
NKEESTIISGGSDSTVKIWKDVTEKLMVEEEEKANLKLENEQELSNLIQNKQFEKAIGLA
LRLEQPFRVLGIFKDILDKDASQIQDIISQLDNEQLSKLLSFVCHWNTNSKHASVSQFVL
SAVLKEKSADELLEFTSIKEIIESLLPYTERHYERISQLVQQSLFVTYTWESMKLS
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atggttacagatcccttaagaaaaaactatgagttagaatcaactgttaaatctttttat
acaggaggaacatcatttctatcaaaaaatggtacagaaatgttgtgcacttgtggagat
gttgtaaatgccttagatctatcaaatggggaacgaatctatcaattgaaagatgatgga
agtgatattacctgttttgctgcatctcctgatggcaaaattttaataactgcttgtaaa
gcactgttgctacatcaatttagtctaagtctgagaacatttacgagacgctggaaggtt
tctcacaaaactcaggttcttgcaatgacttttgattcttcatcaacattattagcaaca
ggctccagcgacaccacaattaaaatttatgatgttgtaaaaatgtattatacccacaac
ttcaagggttctcaaagttcagttagtgtacttaaatttcatcctcacacagaaaaatta
tctttaatatctgcttcagttgatggaaaaatatatatgtgggatttgcaaacaagcaag
tgtgtgtcagtactagatggtcattacagccctgttacatcattagagttttcacaagat
gcattagttagtgcagggcgagataaaattcttgtgttttgggacttgaattctagaaag
caaattaggacagttccaacttttgaggtaatagaaagtttggttgttgttccaaaagaa
aagtccttatttaaaaataccagtatgaaagacacagagtttgttgttactgctggtgaa
aatggtagcttgcggttttggagtttgattggtggattttgtgcttatacttcacaaaaa
gaaaattcagagtcaaatattgtacaactccacttcgatagtaattctgaaaaacttatt
gttgtcacagaagaacataatataattgtgtataaccccatatcattgaaaccaatttta
aagtttgttggtcattttgatgaaattttggacctaaaatttttcggtgaaaacgaagag
tacattgggatggcaactaatagcaatcagatcaatattatgcagagaggattactttct
tctcacatgttgaaaggacatagtgatattgtgttatcaattgatgtaagtttcaatggc
aaatatctggcttcttcttctaaagataatactattcgagtgtggtgcaaagatgaagag
gaagataaattttgctgtgttgcagttggtaatggtcacactcatgcagttagtagtatt
tcctggcctgttctttcaactgattatttggtcactggaagtcaggatctgacattgaaa
tgctggaagctaccttctttactattgaaaactgaatgtgttaatttgcatgtaaaatgg
acagaaaaagctcatgataaggatgttaatgtggtaagaatatcacccaatgataaaatt
ttggtatctggctctcaagacaaaatggcaaaagtttggaagtttaaatcaggcactttg
cttggcacgttgcgtggtcacaaacgtggtatatggtgtgcttgtttctctcctgttgac
caatgcattgcgacaggatcagcagattctaccataaaattgtggactctatctgatttt
acttgcgttaagacatttgaaggtcacagtaattcagttttaaaagtacactttctatta
aaaggaatgcaagttgtttcaagtggctctgaaggactaataaaagtttggaatattcgt
aacaatgagtgtatatcaacagttgaagcccacgacgaaaagatttggtgtttagctgtc
aataaagaggagagtacaattatttcaggtggaagtgattctacagttaaaatatggaag
gatgttacagaaaaacttatggttgaagaagaagaaaaagcaaatttaaaactagagaat
gagcaagagttatcaaacttgattcaaaataaacaatttgagaaagcaattggtttggca
ttaagattagaacaaccattcagggtgcttggaatttttaaagatatacttgacaaagat
gcatcgcaaattcaagatattatatcacaactagataatgaacagttgagtaaactgctt
agttttgtatgtcactggaatacaaatagcaagcatgcttctgtctcgcagtttgtctta
tctgctgtcttgaaagaaaaaagtgcagatgagcttttagagtttacaagtataaaagaa
ataattgagtcattgctaccatatactgaaagacactatgaaagaattagtcagttggtt
cagcaatcactttttgtgacatacacatgggaatcaatgaagttatcttaa
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