Hydra vulgaris (swiftwater hydra): 101238687
Help
Entry
101238687 CDS
T01080
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg04140
Autophagy - animal
hmg04142
Lysosome biogenesis
hmg04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
101238687
04140 Autophagy - animal
101238687
04148 Efferocytosis
101238687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hmg04131
]
101238687
Membrane trafficking [BR:
hmg04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
101238687
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
Clathrin
zf-RING_Vps41
VPS18_solenoid_2nd
WD40_CDC20-Fz
zf_RING_Vps8_fungal
Beta-prop_HPS5
WD40_WDHD1_1st
WD40_Prp19
WD40
Beta-prop_THOC3
PEP5_VPS11_N
Beta-prop_EML_2
Beta-prop_IFT122_1st
zf_RING_Vps8
Beta-prop_WDR3_1st
zf-RING_2
Beta-prop_WDR19_1st
TPR_YpiA
Beta-prop_WDR5
zf-RING_5
zf-C3HC4
Ist1
WDR55
Vps39_1
WD40_like
Beta-prop_VPS8
zf-rbx1
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
101238687
NCBI-ProteinID:
XP_047137271
LinkDB
All DBs
Position
7:51481047..51601715
Genome browser
AA seq
870 aa
AA seq
DB search
MSERKVEDREENFTQNIDDSNEDDDDDDDDDDDDDDDDDGKDDVEPKLKYERIGNSILEI
FTKDAASCMAVHSKFLALGTHYGVVHILDHQGNNIRKFPSHATTINQIAIDSNGDYVSSC
SEDGRFIINGLYTTENNTQHNFDCPIRSIGLHPDFGRRGNKQYVIGVGEKLTLFEKGWMR
NKSVILHSGEGFVRSIKWKNNFIAWANSEGVEVYDINAKERFTHIPRDQTSARDELFHCN
LSWKDDTCFFVAWGNSIKVCIVKERPPNDIRGLPRHFVEIAHIFEIDYFASGIAPFGNEM
AVLAYSFDKEDGAAPTKGTAKRPQLLVIKPEGMYKFEEASIDCLSIRGFEEYKCNNYFLE
KVEEEQLFYIVSPKDIVIARPRDLDDHISWLMENKKFEEALQKAENQQRELKRLSVLEIV
KAYLNYLFANNKFEEAAKLCDRKLGRCKELWEEQIYKFIEKKSLKMVTRYIPRSNPQLDN
TIYELVLNEYLQTDLEGFHKLLTEWPSNLYKPETIILLLQEKIRETPESLLQRSLATLYA
QKQKFGEALRIYLTLKDPGVFEMIAKHKLLSWVKDKCLQLMEIESNKAVAMFIDNMDHFE
VDDVVKQLNQNEKLLHQYLHGLFTKDPQAGHNYHNKQISLYAEFQPDRLQSFLKNSNFYQ
LEKAFKVCEERNLISEMVFLQGRMGNKKEALLLIIDKMCNIQKAIDFAKEENDTDLWDYL
IEKSLPKPEYIKELLISIGTHVDPKLLIKKIPSKMEIPGLRDALVKILQDYNLQVYLHEG
CKAILDKDSVALYDKQVKNLSKGFLISDIDHCPTCEGKLIVEDNRKASTIVTFFCKHTYH
EVCLRGMSMQPRQTEPFCPTCSSKTSKKKI
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaagaaaagtcgaagaccgcgaagaaaattttacacagaatatagatgatagt
aacgaagatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgga
aaggatgatgttgaacctaagctaaaatacgaacgaataggaaattctattctagaaata
tttaccaaagatgcagcaagttgcatggcagtacactctaaatttttggctcttggcaca
cattatggagttgttcatattttggatcatcaaggaaacaatattcgtaaatttccttcc
catgcaacaacaattaatcaaatagcaattgatagtaatggagattatgtttctagctgc
tctgaagatggcaggtttattattaatggcctttatacaacagaaaataatacccaacat
aattttgattgtcccattcgttctattggcttgcatcctgattttggacgtagaggaaac
aaacagtatgtaattggagttggcgaaaaattaacattatttgaaaaaggttggatgcgc
aataaatcagttatccttcattctggagaagggttcgttcgatcaattaaatggaaaaac
aattttattgcatgggcaaattctgagggtgttgaagtttatgacatcaatgctaaagaa
agattcacacatataccaagagatcaaacaagtgcacgcgatgagttattccattgtaat
ttatcttggaaagatgacacttgtttttttgtggcatggggaaattcaatcaaagtttgt
attgtaaaagaaagaccacctaatgatataagaggtctacctcgacattttgtagaaatt
gcacatatctttgaaatagactattttgcttctggaattgctccatttggtaatgaaatg
gctgtattggcatattcatttgataaagaagatggtgctgctcctacaaagggcaccgca
aagcgacctcaacttttagttataaaaccagaaggaatgtataaatttgaagaagcatca
attgattgtttatctattcgcggctttgaagaatacaaatgtaataattattttctggaa
aaggttgaagaagaacaattgttttacatcgttagtcctaaagatattgtcattgctcga
ccaagggatctagatgaccatatatcttggcttatggaaaacaaaaaatttgaagaagct
ttacaaaaagctgaaaaccagcaaagagagctaaagcgactttctgttttggaaattgtt
aaagcttatctcaactatctcttcgccaacaataaatttgaagaagcagcaaagttgtgt
gatcgcaaacttggcagatgcaaagaactatgggaagaacaaatttataaatttattgaa
aagaaatctttaaagatggtaactcgatatattcctcgttctaatccacaattggataat
actatatatgagcttgtgttgaatgagtatttgcagacagaccttgagggatttcacaag
ttgcttactgaatggccaagtaatctttacaaacctgaaactataattttgttacttcag
gaaaaaattcgagaaactcctgaatcacttttgcagcgatctcttgctacattatatgca
cagaaacaaaagtttggggaggctttgagaatttatctaaccttaaaggatccaggtgta
tttgaaatgattgctaagcacaaattgttatcatgggtaaaagacaagtgtttgcaactc
atggaaattgaatccaataaagcagtagccatgtttattgataatatggatcattttgaa
gtagatgatgttgttaaacaactaaatcaaaatgaaaaacttttacaccagtatttacat
ggattgtttacaaaagatccacaggctggtcataattatcacaacaaacaaatttctcta
tatgcagaatttcaacctgatcggttacaatcttttttaaaaaatagcaatttttatcaa
ctagaaaaggcattcaaagtttgtgaagaaagaaatttaatttcagagatggtatttcta
caagggagaatgggaaataaaaaagaagcccttttgttaattattgataaaatgtgcaat
attcaaaaggcaattgattttgcaaaggaagaaaatgatacagatctttgggattattta
atagaaaagtctcttccgaagccggaatatatcaaagaactattgatcagcattggtacc
catgttgatcctaagttactaatcaagaaaattccatcaaaaatggagattcctggtctg
agagatgctttagtgaaaattttacaagattacaatttacaagtttatttgcatgaaggt
tgtaaagctatattagacaaagatagtgttgccttgtatgataagcaggttaaaaatctt
tcgaaaggatttttaatatctgatattgatcattgtccaacatgcgaaggaaaattaatt
gtagaagataacagaaaagcttcaacaattgtgacatttttttgcaagcacacttatcat
gaagtatgtcttcgaggcatgagcatgcagccaagacaaacagagcctttttgtcctaca
tgttcaagcaagacatctaaaaagaagatttag
DBGET
integrated database retrieval system
