Hydra vulgaris (swiftwater hydra): 101240588
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Entry
101240588 CDS
T01080
Name
(RefSeq) collagen alpha-1(IV) chain-like precursor
KO
K06237
collagen type IV alpha
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg04382
Cornified envelope formation
hmg04512
ECM-receptor interaction
hmg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101240588
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
101240588
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
101240588
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hmg04147
]
101240588
00536 Glycosaminoglycan binding proteins [BR:
hmg00536
]
101240588
Exosome [BR:
hmg04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
101240588
Glycosaminoglycan binding proteins [BR:
hmg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101240588
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
101240588
NCBI-ProteinID:
NP_001296590
UniProt:
Q9GQB1
LinkDB
All DBs
Position
4:48087787..48102922
Genome browser
AA seq
1723 aa
AA seq
DB search
MNHTTKWTIWIVLIFTLHSCLVFTQLCGGGGCNQCSNVCVGQKGDRGSVGLPGFKGPIGE
PGFPGGEGPAGRPGEKGDGGAPGLQGEVGARGKVGPPGTPGIPGSHGRPGDEGRQGEPGL
PGCNGTKGDIGPPGPRGKDGVQGPSGLPGPIGPPGEPGDSTATKLKGQKGEPGPKSQDGP
AGDPGTKGDKGESGKAGRMGPQGLRGEKGARGDSNITIFGERGDKGDIGLPGPPGRDCNG
SSVTGELITNIQGPKGEQGKKGDQGQKGEPGQPGQAGEAGQDGQKGEKGDKGEIGSAGPS
GIQGEKGDIGATGAAGTKGEPGSDGSLGSPGQKGDHGTKGSEGPVGDRGKQGESITGPPG
QIGEKGQRGPEGKKGEPGPEGPPGPNGEVGDTGPPGLKGLKGEIGMTGPSGEPGKTGAEG
MKGPIGPAGQRGETGSKGESGRPGQSVQGSPGMDGNPGQIGPPGEPGIPGFPGPPGNPGQ
VVNDLGETVLPGPPGDQGPQGIQGVAGPQGSPGIRGDKGDACKSCPSGPQGEKGVAGQDG
LPGANGEKGDKGDEGKPGLEGSVGDPGESGLTGPQGPIGEKGDTGAKGNKGERGSDRIVQ
GERGEKGTDGMPGSPGSIGFKGEQGVPGDPGTDGPQGPQGLQGPQGDRGAPGKSGIPGNN
GEKGEKGNKGDGLRGFKGERGRDGEPGPKGSQGPMGKPGPKGEPFSTALKGQQGDKGDVG
SEGPPGPQGAEGQVGNQGFKGEPGLRGAPGSGEKGEKGDAGTPGIAGKNGENGKDGQDGP
KGDKGEKGLQGPIGISGPIKGEPGLKGDPGKPGLDGAPGKSVPKGEPGRDGKDGDPGAKG
EPGTPGESGRDGEKGEIGPQGPQGDKGDQGQSVIGPKGETGAIGKKGETGQDGLKGRDGI
GKQGANGEKGEKGNSVVGLPGDPGEKGSPGEKGKDGISGKQGKPGPPGKDGVDGTPGKDG
LPGNPGPEGPKGEKGVTGPTGLDGEKGEPGYSGQKGAKGETGVRGKPGATSNVMGPKGNR
GESGAKGEPGKQGPPGAEGPQGEKGERGIGTDKGTKGDTGDIGLQGPKGERGERGEQGRK
GDQGPIGPKGDVGEPGPAGSIGNTGISGNDGPKGESGPPGIKGEPGSVGSIGPKGSKGEQ
GEKGERGSTLKGNPGPEGPRGPTGPPGPAGKDYILDLEVGPLGEKPTKGEPGEDGPKGDK
GDIGETGSQGTKGEKGVPGSKGEKGEQGLEGPKGLEGRVGLAGSKGDKGIKGVIGKPGPT
GDKGEKGLQGFKGDTGPQGIQGKEGEPGREGAKGLKGEVGAEGKMGPPCDAGATIIGEKG
DRGEKGEAGQRGYKGEPGPSSQLTINPGAKGEQGDRGIKGEKGNIGPKGINGPFGKDGSI
GPEGPKGDSGQKGETGLDGPKGEKGQPAIGTGPKGEKGDQGPPGPQGPQGDIGEKGDIGP
PGETGDIGPQGIKGEFGIAGIKGETGPPGLQGPIGLKGDQGPPGDAGKVGPPGRSGSGDF
GFYLVKHSQSIKVPSCPAGMQTMWEGYSFLYAQGNERAFGQDLGQPGSCLKRFSTMPFLF
CDIQNKCVVASRNDYSFWLSTAEKPKEAPSSGADLENYISRCIVCEAPSHVLAVHSQSEL
DPKCPDGWENLWTGFSFLMYNSAGAQGSGQLLSSSGSCLEDFRVNPYIECHGRGTCWYYG
PTLSFWLSTIGESNMFQVPKFEILERNLKARVSRCAVCMKSVP
NT seq
5172 nt
NT seq
+upstream
nt +downstream
nt
atgaatcacacgaccaaatggactatttggattgtgttgattttcacgttacattcgtgt
ttagtttttactcagttgtgtggtggtggtggttgtaatcaatgcagtaatgtttgtgtt
ggtcaaaaaggagacaggggttctgttggtctgcctggatttaaaggacctattggtgag
cctggatttcctggaggagaaggtcctgctggaaggcctggagagaaaggagatggtggt
gcccctggtttacaaggagaagttggtgctagaggtaaagtaggaccacctggaacacct
ggaatcccaggttctcatggtcgacctggagatgaaggaagacaaggggagccaggtcta
ccagggtgcaacggaaccaagggagatattggtcctcctggtcctcgtggtaaagatgga
gttcaaggaccatctggattacccggaccaattggtcctccaggagaaccaggcgattct
actgcaacaaagttaaaaggtcaaaaaggagaaccaggaccaaaaagtcaagacggacca
gctggtgacccaggaacaaaaggcgataaaggagaatctggaaaagcaggaagaatgggt
ccacaaggtttgcgtggcgagaaaggggctagaggtgattctaatattaccatatttgga
gaacgtggtgataaaggggacattggcttaccaggaccaccaggcagagactgtaatgga
agttcagttactggagaacttataacaaatattcaaggcccaaaaggtgagcaaggtaaa
aaaggagatcaaggacaaaaaggagaaccaggacaacctggtcaagctggagaagcgggt
caggatggtcaaaaaggagaaaaaggtgataaaggagagattggtagtgctggaccttct
ggaattcaaggtgaaaaaggtgatattggtgcaactggtgcagctggtacaaaaggggaa
ccagggtctgatggctctctaggttcaccaggccagaaaggtgatcatggaaccaaaggt
tctgaaggtcctgttggtgatcgaggtaaacaaggagaaagcataactggaccacctggg
caaataggtgaaaagggacagcgtggaccagaaggaaaaaaaggagaacctggtccagaa
gggcctcctggacctaatggtgaagtaggagatactggacctccaggtcttaaaggttta
aaaggtgagataggtatgactggtccaagtggtgaacctggaaaaactggagcagaagga
atgaaaggaccaattggacctgctggtcagcgaggagaaacaggatcaaaaggagagtct
ggaagaccaggtcaaagtgtacaaggtagtcctggtatggatggtaatcctgggcaaatc
ggacctcctggagaacctggaattcctggttttccaggtccacctggaaatcctggtcaa
gttgtaaatgatctaggtgaaacagtattaccaggccctccaggtgatcaaggtcctcaa
ggtattcaaggtgttgcaggaccacaaggaagtccaggtattagaggagataaaggagat
gcttgcaaatcatgcccaagtggcccgcaaggagaaaagggtgtagcaggacaagatggt
cttccgggtgctaatggagaaaaaggtgataaaggagatgaaggtaaacctggtcttgaa
ggaagtgttggtgatccaggtgaaagtggactaaccggaccacaaggacctattggtgaa
aaaggtgacacaggtgctaaaggaaataaaggggagcgtggatctgataggattgttcaa
ggagaacgtggtgaaaaaggtactgatggtatgccaggatctcctggttccataggattt
aaaggtgaacagggggttcctggtgatccaggtactgatggaccacaaggacctcaagga
cttcaaggtcctcaaggtgatcgtggtgctcctggtaaatcaggtataccaggcaataac
ggagagaaaggtgaaaagggaaataaaggtgatggcttacgtggatttaaaggtgagcgt
ggtcgtgatggagaaccaggaccaaaaggatctcaaggaccaatgggtaaaccaggacct
aaaggagaaccattttctacagctttaaaaggacaacaaggtgacaaaggagatgttggt
tcagaaggtccacctggacctcaaggagctgaagggcaagtaggaaaccagggatttaaa
ggtgagccaggactcagaggtgcaccaggaagtggagaaaaaggagagaagggtgatgct
ggcacaccaggaatagcagggaaaaatggagaaaatggtaaggatggtcaagatggaccg
aaaggtgacaaaggtgaaaaaggcctgcaaggaccaattggtatttctggtccaattaaa
ggtgaacctggtttaaaaggtgatccaggtaaacctgggcttgatggcgctcctggaaaa
tctgtaccaaaaggtgaacctggtagagatggaaaagatggagatccaggagctaaaggt
gaaccaggcactcctggtgaaagcggtcgtgatggggaaaaaggtgaaattggacctcaa
ggccctcagggtgataaaggagatcaagggcaatcagtgataggtccaaagggtgaaact
ggtgctataggtaaaaaaggagaaactggtcaagatggcttgaaaggcagagatggaata
ggtaaacaaggagctaacggtgaaaagggtgaaaaaggaaactcagtagttggtttgcca
ggtgatcctggagaaaaaggttcaccaggagaaaaaggcaaagatggaatttctggaaaa
caaggaaaacctggaccacctggaaaagatggtgttgatggcactcctggtaaagatggt
ttgcctggaaatccaggcccagaaggacctaaaggcgaaaaaggagttactggaccaact
ggtttagatggggaaaaaggagagcctggatacagtggacaaaaaggtgccaagggagaa
actggtgttcgtggaaaacctggagccacaagtaatgtaatgggaccaaaaggaaatcgt
ggggagtctggtgctaaaggcgaaccaggaaaacaaggaccacctggggctgagggacct
caaggtgaaaaaggagaaagaggtattggcacagataaaggtactaaaggggatacaggt
gatataggattacaaggacctaaaggagaaagaggagaacgaggtgaacaaggtcgaaaa
ggagatcaaggtcctataggaccaaaaggagatgttggagaacctggtccagctgggtca
atcggaaacacaggtatttctggcaatgatggacctaaaggtgaatctggacctccaggt
attaaaggtgaacctggttcagttggaagtattggacctaaaggaagcaaaggagagcag
ggtgaaaaaggagagagaggaagcacactgaaaggaaatcctggtcctgaaggacctcgc
ggccccacaggtccacccggaccagctggaaaagactatatacttgatcttgaagtcggt
cctttgggggaaaaaccaaccaaaggtgagccaggagaagatggaccaaagggagataaa
ggtgatattggtgaaactggctcacaaggaactaaaggtgaaaaaggtgttccgggttct
aaaggagaaaaaggagagcaaggtttagaaggaccaaaaggcttggaaggaagagttggt
ttagctggatcaaaaggggacaaaggtataaaaggagttattggaaagcctggtccaact
ggagataaaggtgaaaaaggtttacaaggttttaaaggagatacaggaccacaaggaatc
caagggaaagaaggagagccaggaagagaaggagcaaaaggacttaaaggagaagtagga
gctgaaggaaaaatgggaccaccttgtgatgccggagctacaattattggtgaaaaaggt
gatagaggagaaaaaggtgaagctggacagcgtggttacaaaggagaaccaggtccatct
agtcaactaactattaatccaggcgctaaaggtgaacaaggagatagaggaattaaagga
gagaaggggaatattggaccaaaaggtataaatggtccatttggtaaagatggttcaatt
ggacctgagggaccaaaaggagattctggtcaaaaaggagaaactggtttagatggtcca
aaaggagaaaaagggcagccagcaataggaacaggtccaaaaggtgaaaaaggtgatcaa
gggcctcctggtccacaaggcccccagggtgatattggagaaaagggtgatattggaccg
ccaggagaaactggcgatattggaccacaaggaataaaaggagaattcggtatagctggt
attaaaggtgaaactggtcctcctggtctacaaggtcctattggtttgaagggagaccaa
ggaccgcctggtgatgcaggtaaagtaggtccacctggtcgtagtggctctggtgatttt
gggttttatcttgtcaagcacagtcaatctatcaaggttccatcttgtccggcaggaatg
caaactatgtgggaaggttatagtttcttatatgcacaaggtaatgaacgtgcgtttggt
caagatttaggtcaacctggctcttgtcttaaacgatttagcacaatgcctttcttattt
tgcgatattcaaaataagtgcgttgttgcatcaagaaacgactattctttctggctttct
actgcagaaaaaccaaaggaagcaccatcgagtggagctgatcttgagaactacatttca
cgttgtattgtatgcgaggcaccgtcccacgttctagctgttcacagtcaaagtgaacta
gatccaaaatgtccagatggatgggaaaatctatggactggatttagtttcctaatgtac
aacagtgccggtgctcaaggatccggtcaactgttatcttcatctggctcttgtttggaa
gattttcgtgttaatccatatattgaatgccacggtcggggaacatgttggtactacggc
cctactcttagtttttggttatctactattggcgaaagtaacatgtttcaagttccaaaa
tttgaaattcttgaaagaaatcttaaagcacgagtcagtcgctgtgctgtttgcatgaaa
tctgttccttaa
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