Hydrocarboniclastica marina: soil367_00185
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Entry
soil367_00185 CDS
T06192
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
hmi
Hydrocarboniclastica marina
Pathway
hmi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
soil367_00185 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hmi03400
]
soil367_00185 (recD)
Enzymes [BR:
hmi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
soil367_00185 (recD)
DNA repair and recombination proteins [BR:
hmi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
soil367_00185 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
Viral_helicase1
SH3_13
AAA_22
Helicase_RecD
UvrD-helicase
UvrD_C
AAA_16
SLFN-g3_helicase
T2SSE
PhoH
nSTAND3
MdcG_N
DUF4633
NACHT
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
QCF24502
UniProt:
A0A4P7XEI7
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All DBs
Position
complement(37918..40005)
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AA seq
695 aa
AA seq
DB search
MASDSLPLHHQLTAWVERGWLRDIDLALVQFLHGQAPEARDDALLAAALASHQLGRGHIY
LDLARTLGHPDEALSLPPEGDSNSEGLALPSSLLSGWTLDGWAQSLRQSGFVSMGTERVD
GASTQSLPGAAEDDNRPLVLDRGRLYLRRYWQYEQQVARAIRSRLEQPVTGDDRDLSRVV
ETLFQPLRSTEEMPSTGVHWQTVAAALAARSRFTIISGGPGTGKTTTVVRVLGVLQQLAL
DAGSRPLRIHLAAPTGKAAARLTESIGAAVDQLPQDVQPFIPLTVTTLHRLLRPKPFSRK
FRHDAGNPLHLDLLVVDEASMVDLELMAALLDALHPSTRLILLGDKDQLASVEAGAVLGE
LCQGADQPGYSQNLVRWLYDCTGYDLTPWQAQQAALAADNPTIDDHIALLRKSHRFGASS
GIGQLAEAINRQDASHATKLIQHGGFSDVAWIATRAPDGVESALLRELILEGAATRFSHP
DESGGYKAYLDIVHQGPDRFDSFDAWTRAVLAAFGRFQVLSALRKGPFGVESLNVEIEKI
LREVRLIGGAGAWYAGRPVLVTRNDYSLGLMNGDVGIALPDPESGDHLRVCFQAADGAVR
KVLTSRLVSVETVFAMTVHKSQGSEFNHTCLVLPDRVSPILTKELLYTGITRARDRFSLV
VADRRVFQAAVERRTQRASALAERLAEPFRVPGEC
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggcctctgattcccttccattgcaccaccaactgacggcgtgggtggagcggggctgg
ctgcgtgacatcgacctggcgctggtgcagtttctccacgggcaggcgccagaagccagg
gatgatgcccttttggcggccgcactggccagccaccagctgggccgcggccatatctac
ctggatctggcgcggactttgggccaccccgacgaagccctgtctcttccgcccgagggc
gacagcaacagtgagggcctggctttgccctcgagcttgctgtccggctggacactcgac
ggctgggcgcagagcttgcggcagtctggcttcgtcagcatgggcacagagcgcgttgat
ggcgcgagcacgcagtctctgcccggcgctgcagaagacgataaccggccgctggtgctg
gaccggggcaggctctacctgcgccgctactggcagtatgaacagcaggtcgcccgcgcc
attcgttcacggctggaacagcccgtaacgggtgacgaccgggatctcagccgtgtggtc
gaaacgctattccagcctttgcgcagtaccgaagagatgcccagcactggcgtgcactgg
cagacggtagctgcggcgctggcggcgcgcagccggtttaccatcatttccgggggcccg
ggcacgggtaaaaccaccaccgttgtccgggtgctgggcgtgctgcagcaactggcgctc
gacgccggcagccggccgttacgcatccatctcgccgcgcccacgggcaaggccgcagca
cgactgactgaatcgattggcgcggcagtcgatcagcttccccaagatgtccagccgttc
attccgctgacggtgaccaccctgcaccggctgttgcgacccaagcccttctcgcgcaag
ttccgccacgatgcaggtaatccgctgcatcttgatctgctcgtggtagatgaagcgtcg
atggtagacctggagctcatggcggctttgctcgatgccctgcatccgtcgacccgcctg
atcctgctgggggacaaagatcagctggcttcggtggaggccggggcggtactcggcgaa
ttgtgccagggcgccgaccagcccggctatagccagaatctggtccgctggctgtacgat
tgcaccggctatgacctgaccccctggcaggcccagcaggcggctcttgcggctgacaac
ccgactatcgacgaccacattgccctgttacgtaaaagccaccgattcggcgccagcagc
ggcattggtcagctggccgaggcgataaaccgacaggatgccagccatgcgacgaagctg
atccagcacggcggtttcagcgatgtcgcctggatcgcgacacgggcaccggacggtgtt
gagtcggcgcttcttcgggagctcatccttgaaggcgcagccacgcgcttttcccatcct
gatgaaagcggaggctacaaggcctatctggacattgtccatcagggcccggaccgcttc
gacagttttgatgcctggacccgggccgtcctggcggcgttcggacgattccaggttctg
tcggcgctgcgcaaggggccgttcggggtagagagcctcaacgttgaaatcgagaaaatc
ctgcgtgaagtccgtctgattggcggcgctggggcctggtatgccggccgtccggtgctg
gttacccgcaacgactatagcctgggtctcatgaatggggatgtcggcatcgccttgccc
gaccctgaatccggcgatcacctacgtgtctgcttccaggcggcagacggcgccgtccgc
aaggtgctgaccagccgtctggtatcggttgaaaccgtcttcgctatgaccgtacacaag
tcccagggctccgaattcaatcacacctgcctggtcctgccggaccgggtcagtccgatc
ctgaccaaagagctgctctataccggcattacccgcgcccgtgacaggttcagtctggtc
gttgcggatcgacgagtattccaggccgcggtcgagcgccgtacccagcgggcgtccgcc
ctggcggagcggcttgcggaaccgtttcgggttcccggcgagtgctga
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