Hydrocarboniclastica marina: soil367_00190
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Entry
soil367_00190 CDS
T06192
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
hmi
Hydrocarboniclastica marina
Pathway
hmi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
soil367_00190 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hmi03400
]
soil367_00190 (recB)
Enzymes [BR:
hmi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
soil367_00190 (recB)
DNA repair and recombination proteins [BR:
hmi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
soil367_00190 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
Adeno_PIX
ResIII
Motif
Other DBs
NCBI-ProteinID:
QCF24503
UniProt:
A0A4P7XDC6
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All DBs
Position
complement(39995..43648)
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AA seq
1217 aa
AA seq
DB search
MSEPLRPLTFPLRGTRLIEASAGTGKTFTIAALYVRLVLNHGGSKSFGRPLTPAEILVVT
FTKAATEELRDRIRSNLAAAARMFRGEPVDHPFLAPLRSEYEPEQHLGLARRLELAANSM
DDAAIFTIHGWAQRMLRQHAFDSGQAFNTEIEEQLEPLWQEAARDYWRTFAYPLSQTAYA
ALADALGSADRLAALARHYPRSLHSLDTACYQELAHWEAGCLAQESRARDKWRQEEPGIL
SWFENALAEGHLNRTSHKDDVVRQQLQELSAWARGETVFIADDHGKLGSRRLKLKKNIAL
PDFVALEALSDLQDRLMLPDHMSGRLQAHAAAWCHNRVEVQKKRRGSMSFDDMLHHLDQA
LAGAGGPRLTATIRQHFPVALIDEFQDTDPEQYRIFRQVYSQREDLGFFMIGDPKQAIYG
FRGADIYTYLAARRDSKGQHFTLDTNFRSVPPLVAGVNQVFEYAGRRPQGAFLLGDEIPF
ESVGSREKPDELQWNGRPLAGLTFWSHPGLGFSNKSDYLAALANSCASEIRRMLGAARAG
EARFSNPRRPLQPSDFAILVRDFNEAGAIRTALAQRGLRSAYLSDRESVFACAEATDLLM
WLRAVAEAERESLVRDALASRTLNLDLAQLDVHNENELAWEARIEQFRGYRVLWQQRGVL
PLMRRFLEDFDVPRRLLAQADGERSLTNLLHLAELLQSQASQLDGEQALIRFLADQIDSG
GHDLGEDAVLRLESDEDLIKVITFHKSKGLEYPLVFIPFVGLCRPLGKSRGPLIAFHDDQ
GAPCYADANDAEALARADRERLAEDLRLLYVALTRARHACWVGLLAYGQDRSKGYSCKLA
PSAIAYILNGGCELAPQTLWDALETLCHASPAVTLEPLPPTDDVRLPPAVEQTQPKAPRR
PRLKPTESWWITSYSAILDGARAQPDRAELTAAPQEAGSSPAHENMAELRHEPAERHFQA
DGPGLHGLPRGATVGNFLHNVLEWMAEQGFGTVADHPQLLEAHLEQTCAAHGLEEWATML
ATQLQRIIQVPLQTAGNAPAVPSLASLDPESYRPELEFLFPANTTSTQALDQLVVDTVLP
GRPRPRLRPQTLNGMLKGYIDLTFEVNGRYYVLDYKSNWLGEDDSWYTRERMAEAMLEHR
YDLQYVLYILALHRLLRSRLPGYRYESHIGGACYLFLRGCSSPGQGIFSDRPPRKLIEAL
DELFRAQSLQGELFDGL
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagccactgcgaccgctgacattcccactgcgcggcacccgcctgattgaagcc
agcgccgggaccgggaaaacctttaccatcgccgcgctctacgttcgcctggtactcaac
cacggcggcagcaaaagcttcggtcgcccactgaccccggcggaaatcctggtggtaacg
tttaccaaggcggcgaccgaggagctgcgcgaccgtatccgcagcaacctggccgcggcg
gcgcgcatgtttcgcggcgagcctgtggaccatcctttcctggcgcccctacgcagcgaa
tatgagcctgagcagcacctcgggctcgcccgccgactggagctcgcagccaacagtatg
gatgacgccgctatattcaccatccatggctgggcccagcggatgctgcgccagcacgct
tttgacagtggccaggccttcaatactgaaattgaagagcagctggaaccgctctggcag
gaggcggcccgggactactggcgtaccttcgcctacccgttgagccagaccgcttacgcc
gcattggctgatgccctggggtcggctgacaggctcgcggcgctggcccggcattacccg
cggtccctccacagcctcgacaccgcctgttatcaggagctggcccactgggaggcgggt
tgcctggcgcaggagagccgcgccagggacaagtggcgccaggaggagccggggattctg
tcctggttcgagaacgcgctggccgaaggccatctcaatcgcaccagtcacaaggacgac
gtggtgcgccagcagctgcaggagctgtccgcatgggccaggggcgagacggtctttatt
gccgacgaccacggcaaactcggcagtcgtcgcctcaagctcaaaaagaacatcgccttg
cccgactttgtcgccctcgaagcgctgtctgacctgcaggaccggttgatgctgccggac
cacatgagcggccggctgcaggcccatgccgctgcctggtgccacaaccgggtcgaggtc
cagaaaaagcgccgcggcagcatgagcttcgacgatatgctccatcaccttgatcaggct
ctggcaggtgctggcgggccacgcctgacggcgaccattcgccagcacttcccggtagcg
ctgatcgacgaattccaggacaccgaccccgagcaataccgtattttccggcaggtctac
agccagcgtgaagacctgggcttcttcatgatcggtgatcccaaacaggccatttatggc
ttccgtggcgccgacatctacacctatctggcggcgcgacgtgacagcaaggggcagcat
ttcaccctcgacaccaacttccgctcggtgccgccgctggtcgcaggggtcaaccaggtg
ttcgagtatgctggccgccgcccccagggcgcgtttctgctgggtgatgagattcccttc
gaaagcgtcggcagccgcgagaagcccgatgaactgcaatggaacggccggccgctggcc
ggcctcaccttctggtcgcaccccgggctgggtttcagtaacaaaagcgattacctggcc
gcgctggcaaacagctgcgccagcgaaatacgccgtatgctcggcgcagcgcgcgccggc
gaggcccggttcagcaaccctcgtcgacctctgcagccgtcggatttcgccatcctggtg
cgggacttcaatgaagccggtgccatccggactgccctggcccaacgtggtctgcgcagt
gcctacctgagtgaccgggagtcggtcttcgcgtgcgcggaagcgaccgatttgctgatg
tggctgcgcgccgtggctgaagccgagcgtgagagcctggtccgggatgcgctggccagt
cgcacgctcaatctcgacctcgcgcagctggatgtgcataacgagaatgaactggcttgg
gaggcgcgtatagagcagttccggggctaccgggtgctctggcagcagcgcggcgtgctg
cccctgatgcgtcggtttcttgaggatttcgatgttccccgacgcctgctggcccaagcc
gatggcgagagatccctgaccaatctgctacatctcgcggagctgctgcagagccaggcc
agccagctcgatggggagcaggcattgatacggttcctggccgaccagattgatagcggt
ggacatgacctcggcgaggatgccgtgttgcgcctggaaagcgacgaggacctgatcaag
gtcatcacctttcacaagtccaaagggctggagtatcccctggtttttatcccgttcgtc
gggctctgccggccgctggggaaaagccgcggcccgctcatcgccttccacgatgaccag
ggcgcgccatgctacgccgacgccaacgatgccgaagccctggcgcgggccgaccgcgag
cgtctggccgaagatctgcggctactctacgttgcgctcacgcgcgcccgccacgcctgc
tgggttggtctgctcgcgtatggccaggacaggagcaagggttacagctgcaagctggcg
ccgtccgctattgcctatattctcaatggcggctgcgaacttgcgccccagacgctctgg
gacgccctggaaaccctttgtcacgcctcgcccgctgtcacactggagccgctgccgcca
accgatgatgtgcgcctgcctcccgccgtagagcaaacgcagcccaaggccccgcggcgg
cctcgtctgaaaccgactgaatcctggtggatcaccagctacagcgcaattctggacggg
gccagagcgcaaccggaccgggccgaactgactgcggccccgcaagaggcaggcagcagc
ccggcccatgaaaacatggccgaactgcgccatgagccagccgagcggcacttccaggcg
gacggccctggcctccacgggctcccccggggcgccacggtgggcaatttcctgcacaac
gtgctcgaatggatggccgaacagggctttggcaccgtcgccgatcacccgcaactgctg
gaagcccacctggagcaaacatgcgccgcccacgggcttgaagagtgggccacaatgctc
gccactcagctccagcggattatccaggtgccgctgcaaaccgcaggcaatgcgcctgcg
gtcccgagcctggccagccttgacccggagagttaccgtcccgagctggagttcctcttt
ccggccaataccacttccacccaggcgcttgatcagctcgtcgtcgacacggtactgccg
ggtcggccccgtccccggctgcgtccgcaaacactcaatggcatgctgaaaggctacatc
gacctgacgttcgaggtgaacgggcgctattacgtgctcgattacaagtccaactggctg
ggcgaggacgatagctggtacacccgggaacgcatggccgaggccatgcttgaacaccgc
tatgacctgcagtacgtgctctatattctggccctgcatcgcctgctgagatcacgcttg
cccggttaccggtacgagagccatattggcggcgcctgctatctgttcctgcgcggttgc
tccagcccgggacagggtatattcagtgatcggccgccccgcaagctcatcgaagcgctg
gatgagttgttccgggcccagtcgctgcagggggagttgttcgatggcctctga
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