Hydrocarboniclastica marina: soil367_01355
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Entry
soil367_01355 CDS
T06192
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
hmi
Hydrocarboniclastica marina
Pathway
hmi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
soil367_01355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hmi03400
]
soil367_01355
Enzymes [BR:
hmi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
soil367_01355
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
soil367_01355
DNA repair and recombination proteins [BR:
hmi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
soil367_01355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DUF7063
Motif
Other DBs
NCBI-ProteinID:
QCF24707
UniProt:
A0A4P7XG25
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All DBs
Position
complement(293117..293929)
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AA seq
270 aa
AA seq
DB search
MPELPEVETTLRGIRPHLEGRRISQLHVFESRLRWPIPADLPAQIEAAVVERLERRGKYL
LFMTSRGTMIVHLGMSGSLRLEHPHTATRKHDHVQADLTPELCLRFNDPRRFGAWLWTEN
WRQHPLLRNLGPEPLGPDFSGSHLFSASRGRTTAVKNFIMDHHQVVGVGNIYAAEALFLA
GIHPARAAGRISRARYDILADSIRTVLGNAIEMGGTTLRDFINTDGNPGYFKQSLRVYGR
AGQACLTCASTLKASRLGQRATVYCTRCQR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
gtgccagagctaccggaagttgaaacaaccctgcggggcatccgcccccacctcgaaggg
cgcaggatcagccaactgcacgtgttcgagagccgcttgcgctggcccatcccggcagat
ttgccagctcagattgaagcagcggtcgttgaacggcttgaacggcgcggaaagtacctg
cttttcatgacatccaggggaacgatgattgtccatcttggcatgtcgggcagccttcga
ctcgagcatccccatacggccacccggaagcatgaccatgtccaggcggacctcacgccc
gagctttgcctacgcttcaacgatccgcgtcgtttcggggcctggctctggacggaaaac
tggcggcagcatcctttgctacgcaatctgggtccagaaccactgggaccagactttagc
ggtagtcatctgttcagcgccagcagagggcgaaccacggctgtgaaaaactttataatg
gaccaccaccaggtggtcggtgtcggcaacatctacgcggccgaagctttatttctcgca
ggaatacatcccgcccgggcagcaggccgtatcagccgagcacgctacgacatcctcgcc
gacagtatccggactgttctgggcaacgccatcgagatgggcggaaccacattgcgcgat
ttcatcaacacggacggtaaccccggctacttcaaacaatctctccgcgtctacggccgt
gctggccaggcctgcctgacctgcgcctcgaccctcaaagcgtcgcgactaggccagcgg
gcgacggtttactgtactcggtgtcaaagatag
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