Hydrocarboniclastica marina: soil367_03685
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Entry
soil367_03685 CDS
T06192
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
hmi
Hydrocarboniclastica marina
Pathway
hmi02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
hmi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
soil367_03685
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
hmi02022
]
soil367_03685
02035 Bacterial motility proteins [BR:
hmi02035
]
soil367_03685
Two-component system [BR:
hmi02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
soil367_03685
Bacterial motility proteins [BR:
hmi02035
]
Pilus system
Twitching motility proteins
soil367_03685
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
AAA_lid_14
Sigma54_activ_2
HTH_8
HTH_30
AAA_19
AAA_16
HTH_50
cREC_REC
AAA_5
AAA_22
UBA
HTH_1
VpsR
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
QCF25110
UniProt:
A0A4V1D8G5
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All DBs
Position
complement(806376..807725)
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AA seq
449 aa
AA seq
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MTDATALVVDDEPDIRELLDITLTRMNIRCVTAANLKEARDLLAAQPFQLCLTDMNLPDG
NGIDLVQWMQKAHPETPVAVITAYGSMDTAVLALKAGAFDFVSKPVELGRLRELVENALR
LTTPASGAAASDNDSDGLLLGESLEINQLRKQVRKVARSQAPVYISGESGSGKELVARMI
HMQGPRRDGPFVPVNCGAIPSELMESEFFGHKKGSFTGATENKTGLFRAAQGGTLFLDEV
ADLPVSMQVKLLRAIQEKAVRAVGDHLEQAIDVRILSATHKDLPHLVKEGSFRQDLFYRI
NVIELKVPPLRAREDDIPLLTRHILAKLAQDYESPQAQLSAAGLDKLKSYSFPGNVRELE
NILERAFTLCDGDIIDADDLQLAANEEGSGGHSTTPDGRIDLENFLERIEREAIEKALEA
TGGNKTAAAKRLGISFRAMRYRLKKLGME
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgctacagcactggtcgtcgatgacgagcccgatatccgggagctgctcgac
atcaccctgacccgaatgaatatccgatgcgtaaccgcggccaatctcaaggaagcccgg
gacctgctagcagcgcagccgtttcagctctgtctgacagacatgaatctgcccgatggc
aacggcatcgatctggtgcagtggatgcagaaagcccatccggaaacccccgtggccgtc
atcacagcgtatggcagcatggacacagcagtgcttgcgctcaaggcaggtgcttttgac
tttgtctccaagcccgtagagctcgggcggttgcgcgaattggtggaaaacgccctacgg
cttaccacacccgcaagtggcgccgcagccagtgataacgacagcgacgggcttctcctc
ggcgaatcccttgagataaaccagctgcgcaaacaagtaagaaaggtcgctcgcagccag
gccccggtctatatcagcggtgagtctggcagcggcaaagagctggtcgcgcgcatgatc
catatgcagggcccccgacgtgacggccctttcgtacccgtcaactgcggcgccattcct
tccgaactcatggaaagcgaattcttcggccacaaaaagggcagtttcaccggcgcgacc
gagaacaaaaccggcctgttccgcgcagcccagggcggcaccctgttcctggatgaagtg
gctgacctgcccgtatcgatgcaggttaagctgctgcgggcgatccaggagaaagctgtg
cgtgcggtgggcgatcacctggagcaggccatcgacgtgcgcatcctcagcgccacgcac
aaggacctgccccatctggtcaaggaaggcagcttccggcaggacctcttctaccgcatc
aacgtcatcgaactcaaagtccctccgctacgcgcgcgtgaagacgacattcccctgctg
acccggcatatcctggccaagctcgcccaggactacgaaagccctcaggctcagttgagc
gccgccggactggacaagctaaaaagctacagctttccaggcaatgtgcgggaactcgag
aacatactggagcgcgcgttcacactctgcgatggggacattatagacgcagacgacctg
cagcttgcggccaacgaagagggtagcggcggacactcgacaacgccagacggccggatt
gacctggaaaactttctcgagcggatcgagcgggaggccattgagaaggctttggaagcc
actggcggcaacaagaccgcggcggcgaagcggctggggatcagtttccgggctatgcgg
taccggttgaagaagttggggatggagtga
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