Hydrocarboniclastica marina: soil367_06490
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Entry
soil367_06490 CDS
T06192
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hmi
Hydrocarboniclastica marina
Pathway
hmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
soil367_06490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmi03019
]
soil367_06490
03009 Ribosome biogenesis [BR:
hmi03009
]
soil367_06490
Enzymes [BR:
hmi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
soil367_06490
Messenger RNA biogenesis [BR:
hmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
soil367_06490
Ribosome biogenesis [BR:
hmi03009
]
Prokaryotic type
rRNA processing factors
soil367_06490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QCF25593
UniProt:
A0A4P7XG41
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All DBs
Position
complement(1451338..1454745)
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AA seq
1135 aa
AA seq
DB search
MKRMLINATHHEELRVALVDGQRLFDLDIESSTREQKKSNIYKGRITRIEPSLEAAFVDY
GADRHGFLPLKEIAREYFKKSPAQIEGKVNIKEVLDEGTEVIVQVDKEERGNKGAALTTF
ISLAGRYLVLMPNNARAGGISRRIEGDERIELKNAMADVNVPKQMGVIVRTAGIGRTSEE
LQWDLDYLAQFWDAITNAAEARKAPFLIYQESNVIIRAVRDYLRQDIAEVLIDSPQVHEE
VLNFVRAVMPTFEAKIKLYQDDIPLFSRYQIEAQIETAFQREVKLPSGGSIVIDPTEALV
SIDINSSRATKGGDIEETALQTNLEAADEIARQLRLRDMGGLIVIDFIDMTPSKNQREVE
QRVRNALELDRARVQVGKISRFGLLEMSRQRLRPSLSETRSEVCPRCNGQGTIRSIESLA
LSIMRLMFEEASKDKTGEVRALVPVTVATFMLNEKRKQINDIESRQKVKVQIIPVASMET
PHFEVQRLRDDDSDVQQQRNSYEVAMEHAEEAITEPVTVREVVREEAAIKSVPPAAPAPT
PKAPPAATAAQNTLPVPRAPGEEGLLKRISRRIAAFFHGSDQQAGLPHARSTGSSAQTPP
PSQHAGRPRGGEADDRQKTSSGARPDAGQRRQSQPAGPREEDNDRGNRRNRGQRRNERGS
GNRARNPEAKDNRPRSDAAKGPDKAKNVEPEASRSETPARPGADQKSPDQGRDQGTSQGN
DQSKPAGQGGEPRKRQRPRRSRNRDGSPAEGQPRRRERVNTSNEAGTSGDDAPERNRDPE
VVSGSADTKPPAVKVDQGQATDKTASASATPAAQDKREGTSASNAKHEVADEAGSAPAAG
GPVANADVQPETAALPKSKANSSVNSRDAEAVSAPDVVEDKSTGSPASDQPAVAGQPAEE
SVSEQKKSEKAVPQQPDSGPQTTSSSPAGSGGDAGPVRESADNENDQGDASKPDSASKGR
SGQRRPSRGRKSQARPSSAPEAAATTTEEESVGAAPSKEKAAAQGESEPTEKPKAEKPTP
AAPKAEISKVESSNSDNSKSATAKTESSKSQNEEPKSPKQENVKKESAHAESDPTPATPP
APASQQAVDVASETPALASNGRAYNDPREIRRRQREAQKADADKLPQSDKSTDPS
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctcatcaatgcaactcaccatgaagagttgcgcgtcgcgctcgtcgac
ggccagcgcctgtttgacctggacatcgagtccagcacccgagagcagaaaaagtccaac
atctacaagggccgcataacccgcatcgaacccagcctggaggcggcatttgtcgactac
ggcgccgatcggcacggctttctcccgctgaaagaaattgcgcgcgaatactttaagaaa
tccccagcccagatcgagggcaaggtcaatatcaaggaagtgctcgacgagggcaccgaa
gtcattgttcaggttgacaaagaggagcgcggcaacaaaggcgcagcccttacgacattt
atcagcctcgccggacgctacctggtgctgatgccgaacaatgcccgggccggcggcatc
tcccggcgcattgaaggcgacgagcgcatagagctcaagaacgccatggccgacgtcaac
gtgcccaagcaaatgggcgtgatcgtccgcactgccggcattggccggacctctgaagag
cttcagtgggatcttgattaccttgcccagttctgggacgccatcaccaacgcagccgaa
gcccgcaaggcgcctttcctgatataccaggaaagcaacgtcattattcgggcggtgcgg
gactacttgcgccaggacattgcggaagttctgatcgactcgccccaggttcacgaggaa
gtactcaacttcgtccgcgcggtaatgccgaccttcgaagccaaaatcaagctttaccag
gacgacatcccgctcttcagccgctaccagatagaggcccagatcgagacggcattccag
cgtgaggtgaaacttccctcaggtggctccatcgtcatagatccgaccgaagccctggtg
tcgatcgatatcaactcatcacgggcgaccaagggcggcgacatcgaagaaaccgcactg
caaaccaaccttgaagcggccgacgaaattgcacgccagttgcgcctgcgggatatgggc
ggtctgatcgtcattgacttcatcgacatgacgccgagcaagaatcagcgtgaagtcgag
cagcgtgtccgcaacgctctggagcttgatcgggcccgggttcaggtcggcaagatttcg
cggttcggcctgctcgaaatgtcccgtcaacgcctgcgcccttccctcagcgaaacccgc
agtgaggtttgtcctcgctgcaacggccagggcaccatccgcagtattgaatctctggcg
ctgagcatcatgcggctcatgttcgaggaagcgtccaaggacaaaaccggcgaagtgcgt
gcgctcgtcccggttactgtcgcgaccttcatgctcaatgagaagcgcaagcagatcaac
gatattgaaagccgccagaaagttaaggtccagattattcccgtagcgagcatggagacg
ccgcatttcgaagtgcagcgcttgcgcgacgacgacagcgatgttcagcaacagcgcaac
agctatgaagttgccatggagcatgcagaggaagccattactgagccggtaactgtgcgc
gaagtagtccgcgaggaagccgctatcaagtcggttccgccggctgcgcctgcacctaca
cccaaagctccgccagcagcgacagctgcccagaacacgctgcctgttccgcgcgcgccc
ggcgaagagggtctgctgaagcgcatttcacgccgtattgcggctttcttccatggctca
gatcagcaggccggtttgccccatgccaggagcaccgggtcttctgctcaaacaccacct
ccctctcaacatgctggccgccctcgcggtggcgaggctgacgaccgtcaaaagacttca
agcggagctcgtccggatgccggtcaacggcgtcaaagccagcctgcaggaccgcgcgaa
gaagacaacgaccgcgggaatcgccgcaaccggggccaacgccgcaatgagcggggctca
ggaaaccgtgcccgcaatccggaagccaaggacaacagaccacgctctgacgctgccaaa
ggcccggataaagccaagaacgtagaacccgaggccagccgctcagaaaccccggccagg
ccaggcgctgatcaaaagagtccggatcagggccgggaccaaggtaccagtcagggcaac
gaccagagcaagccagcaggtcaaggtggcgaaccgcgcaaacgccagcgtccacggcgc
tcccgcaaccgtgacggatcgccggctgaaggtcagcctcgccgtcgcgaacgcgtgaac
accagtaatgaggcaggcaccagtggggatgatgccccggaacgcaatcgggacccggaa
gtcgtctcaggcagcgccgatacgaaaccgccggctgttaaggttgaccagggccaagct
actgacaagacagccagtgccagcgccacgcctgcagcacaggataagcgggaaggcacc
tctgccagcaatgcaaagcacgaagttgcagatgaggcgggctcagcgccggcggcaggt
ggtcctgtggcgaacgccgatgtgcagcctgagactgctgcgctgccgaaaagtaaagcc
aactcgtcagtaaacagccgtgatgcggaggccgtttccgccccggacgttgttgaggac
aagagcacgggttcccccgcgtcggatcaaccagcggttgccgggcagcctgctgaagag
tccgtgtcggaacagaaaaagtctgaaaaggcagtgcctcaacagcctgattcaggaccg
cagaccacctcgagctccccagccggatccggcggagacgccggaccggtgcgagagagc
gctgacaacgaaaatgatcagggggacgcctcgaagccagactctgccagcaagggccgg
agcggacagagacgcccctctcggggaagaaagtcgcaagctcgcccctcctcagctcct
gaagcagctgcaaccacgacagaggaggaatctgtcggagcggctccgagcaaagagaag
gccgccgcccaaggcgagtcagagccgaccgaaaagcccaaggcagaaaagccaacaccg
gctgcgccgaaggccgaaatctccaaagtggaaagctccaactctgataactcaaagtca
gcaaccgcaaagacagaaagctcaaagtcgcagaacgaagagccgaagagtccaaagcag
gagaacgtgaaaaaagaatcggctcatgctgagtctgacccaacgcctgcaacaccgccg
gcccctgcttcacagcaagcggtcgacgttgcgtccgagaccccagcgcttgcgagcaac
gggcgcgcttacaatgatccgcgagaaatccgccggaggcagcgcgaggcgcagaaagct
gatgcggataaactgccgcagtctgacaagagcaccgatccttcctga
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