Hydrocarboniclastica marina: soil367_06790
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Entry
soil367_06790 CDS
T06192
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
hmi
Hydrocarboniclastica marina
Pathway
hmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
soil367_06790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmi03019
]
soil367_06790
Enzymes [BR:
hmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
soil367_06790
Messenger RNA biogenesis [BR:
hmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
soil367_06790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QCF27861
UniProt:
A0A4P7XL39
LinkDB
All DBs
Position
1517737..1519026
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AA seq
429 aa
AA seq
DB search
MTEAGAEAPVIVHRTRFSEFDLDSSVQRAIADLGFEFCTGIQAETLPFTLAGKDLIGQAQ
TGTGKTAAFLITAIQSLQRNPIAFEERFASEPRVLALAPTRELALQIAKDAEQLTRHTGH
NVVTTIGGMNYERQREQLRNEVVDILVATPGRLLDFLGSQDVFLDQLDLLIIDEADRMLD
MGFIPDVKRILRKCTPKDERQTLLFSATFNQDVLNLASMWTSSAEFVEIKPDQKTAERVK
QVVYMVSERDKLKVLYNYVAKDQVERAIVFANRRDQTRFLDENLRNQGVSVAVMSGEVAQ
NKRVRTLDDFKAGRIKVLVATDVAGRGIHVDNVTHVFNYNLPENAEDYVHRIGRTARAGE
SGTSISFAGEDDAFALPEIEKYIGQKLDCVIPEDELMAEMPKAVIRPQRRPPSGSRSGSP
RRSPSRSTQ
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgacggaagccggggcagaggcgcctgtaatagtacaccggacccggttttcggagttt
gatctcgacagcagtgttcagcgggccatagctgacctgggcttcgaattctgtaccgga
atccaggctgaaaccttgccctttacgctcgcgggcaaggatctgataggccaggcacag
accggtacgggtaaaacagccgctttcctgatcacggccatacagagcctccagcgtaat
ccaattgcatttgaagagcgcttcgccagcgagccgcgggtgctggctctggctcctacc
cgtgaactggcgctacagatcgccaaggacgctgagcagttgacccgtcatacgggacat
aacgtggtaacgactatcggtggcatgaactacgaaaggcaaagggaacagctacgcaat
gaggtggtcgacatattggtggccacaccgggccgcctgctggacttcctcggtagtcag
gacgtctttctggaccagctcgacctgctcattatcgacgaagcagaccgcatgctggac
atgggcttcattccggacgtcaaacggatcctgcgcaagtgcacgccgaaggatgaacgc
cagacgctcctgttcagcgcgacatttaaccaggatgtccttaacctggcctcaatgtgg
acaagctccgccgagtttgtcgaaatcaagcccgaccagaagactgcagagcgcgtaaaa
caggtcgtctatatggtgagcgagcgcgacaagctgaaggtgctttacaactatgtcgcc
aaggaccaggtggagcgggctatcgtttttgcgaacaggcgcgaccagacccgttttctg
gacgagaatctgcgaaatcagggcgtcagtgtggccgtgatgtcgggcgaggtcgcccag
aataagcgcgtgcgcacacttgatgacttcaaagccgggcgaataaaagtactggtcgcg
acagatgtagccggccgaggcatccacgtggataacgtaacgcacgtgttcaattacaac
ctgccggaaaacgccgaagactatgtccaccgcatcggccgcaccgcgcgggcaggggag
tcgggcacgtctatcagttttgccggcgaagacgacgcatttgcactcccggagatagag
aagtatatcggtcagaagcttgactgtgtgataccggaagacgagcttatggcggagatg
cccaaagctgttattcgtccgcaacgacggccccccagtggtagccgttccggcagcccg
cgccgcagcccctcgcgctcaacgcaatag
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