Hydrocarboniclastica marina: soil367_08155
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Entry
soil367_08155 CDS
T06192
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hmi
Hydrocarboniclastica marina
Brite
KEGG Orthology (KO) [BR:
hmi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hmi03032
]
soil367_08155 (topA)
03400 DNA repair and recombination proteins [BR:
hmi03400
]
soil367_08155 (topA)
Enzymes [BR:
hmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
soil367_08155 (topA)
DNA replication proteins [BR:
hmi03032
]
Prokaryotic type
DNA Topoisomerases
soil367_08155 (topA)
DNA repair and recombination proteins [BR:
hmi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
soil367_08155 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QCF25891
UniProt:
A0A4P7XFY9
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Position
1803501..1806170
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AA seq
889 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGSDFVVKSSVGHIRDLPVSGTGKKVDPKERAKLAAQTRK
LEPEEKARYQKQKARDQLIARMGVNPERNWEAHYEILPGKEKVVSELKRLAKNADHIYLA
TDLDREGEAIAWHLMEAIGGEPEKYSRVVFNEITKRAIQEAFKQPGRVDTNRVSAQQARR
FLDRVVGFMVSPLLWSKIARGLSAGRVQSVAVRLIVEREREIRAFVPEEYWQLFANLQPS
AAGEQPLRFEVAKVKGETYRPTSKAQSDAHVERLQKADYKIIKREDKPTRSRPNAPFITS
TLQQAASTRMGFSVKKTMTLAQRLYEAGHITYMRTDSTNLSQDAVASARGYIEKQFGESY
LPAEPRRYSSKEGAQEAHEAIRPTEVKLKASQISGLEKDAERLYDLIWRQFLACQMEDAQ
YLSTTVTVGADDYELRIRGRIVKFDGFTRVMPQQAKKDEDRSLPDIAEGQTLALNKLEPS
QHFTKPSPRYTEASLVKELEKRGIGRPSTYAAIISTIQDRGYARQESRRFYAEKMGDIVT
DRLAESFSNLMDYNFTARMEEELDHIAGGEIDWKTVLDEFYKGFTQQLEQAESPEHGMRE
NAPTETNIPCPNCDRPMQIRTASTGVFLGCSGYNLPPKERCKQTINLIPGDEAVDLDADD
GEGESRALLNKRRCGKCGTAMDSYLLDEKRKLHICGNNPDCSGHEIEEGSFRIKGYEGPT
LECDKCASEMQLKTGRFGKYFGCTNSECKNTRKLLRSGEPAPPKMEPVPMPELQCQKVDD
TYVLRDGAAGLFLAASKFPKNRETRAPLVKELKPHGSELDPKYDYILKAPEKDPEGNPAI
IRFSRKTKEHYVMTEVDGKATGWSAFYSGGKWAAQEKEKAKDKPKKKKA
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaaagcctggttattgtcgagtcaccagcgaaagcgaaaacgatcaataagtat
cttggatctgatttcgtggtgaagtcgagtgtcggccatatccgtgatttgccggttagc
ggcaccggaaagaaggtcgaccccaaagagcgcgcgaagctggcggcacagacgcgcaag
cttgagccagaggagaaggcccgctaccagaagcagaaagcccgggaccaactgatcgcg
cgcatgggcgtaaatcccgaacgaaactgggaggcgcactacgagattctgcccggcaaa
gagaaagttgtcagcgagctgaaacgccttgccaagaacgcagaccacatctatctcgcg
accgatttggaccgcgagggggaggccatcgcctggcacttgatggaagcaatcggcggt
gagccggagaagtacagccgcgtcgtcttcaacgaaattaccaagcgcgcgatccaggag
gcgttcaagcaaccgggtcgcgtcgataccaatcgagtcagcgcacagcaggcccgtcgc
tttctggatcgggttgtgggctttatggtttcgccgctgctctggagcaaaattgcccgg
ggcctgtctgcagggcgggtgcagtccgtggcagtacggcttatagtcgagcgtgaacgt
gaaatccgcgcctttgtcccggaagagtactggcagctctttgccaacctgcagccgtcc
gccgccggggagcaacctctacgttttgaagtcgcaaaggtcaaaggcgaaacctatagg
cctaccagcaaagcgcaatcagacgcccatgttgagcgtctgcagaaggccgactacaaa
atcatcaagcgggaagacaaacccacgcgttcccgccccaacgcaccttttattacgtca
acgctgcagcaggccgcgagcacccgtatgggcttcagtgtcaagaaaaccatgacactg
gcgcaacggctctacgaagctggccatatcacctacatgcggactgactccaccaatctc
agccaggacgcagtagcatcggctcgaggctatatcgagaagcagttcggcgagtcgtat
cttcctgcagaaccgcggcgctacagctcgaaagaaggcgcgcaagaggcgcacgaggcg
atccgtccaaccgaagtaaagctgaaggcgagccagataagcggtctggaaaaggatgct
gagcggctctatgacctgatctggcgccagtttctggcttgccagatggaggacgcccag
taccttagcacgacagttacggtaggtgcagacgactacgaacttcgtattcgcgggcgt
attgtcaaatttgatggctttacacgcgttatgcctcagcaggcgaagaaagacgaggat
cggtcgctgccggacattgccgagggtcagacgcttgccctcaataagcttgagccgagc
cagcacttcaccaagccgtcgccgcgttataccgaagccagtcttgtcaaagagctggaa
aagcgcggtattggacggccgtccacttatgcagccatcatctcaacgattcaggaccgg
ggctatgcccggcaggaatctcgtcgtttctacgcggaaaagatgggcgacattgtcacc
gaccgtctggccgagtcgttctcgaatctcatggattacaattttaccgcgagaatggag
gaggagcttgatcacatcgcgggcggggagatcgactggaagaccgtgctggatgagttc
tataagggcttcacccaacagctggagcaggcagagtcaccagagcatggcatgcgtgag
aatgcgcctacggagacaaacataccgtgccccaactgtgatcgaccgatgcagatcagg
acggccagcaccggtgtattcctgggttgttccggctacaacctgccgccgaaagagcgt
tgtaagcagacaatcaacctgattccgggtgatgaagcggtcgacctggacgcggatgac
ggcgaaggagagagtcgggcgcttttgaataagcgcaggtgtggcaagtgcggaacagcc
atggatagctatctgcttgacgaaaaacgcaagctgcatatttgtggtaataaccccgac
tgctccggccacgaaatcgaggaggggagcttccgtatcaagggctacgaagggcccacc
ctcgaatgtgacaaatgcgcgagcgaaatgcagctgaagaccgggcgcttcggtaaatac
ttcgggtgtaccaacagcgagtgtaaaaacacccgtaagctattgcgtagtggtgagcct
gcgccgccgaagatggagcctgtgcccatgccggagctgcagtgccagaaggttgacgat
acttacgtgctccgtgacggcgctgcggggctatttctggctgccagcaagttccccaaa
aaccgtgaaaccagggctccgctggttaaagagctcaagcctcatggaagcgaactcgac
ccgaaatacgattacatactgaaggcgccggaaaaggatcccgagggtaacccggcaatt
atccgcttcagccgcaagaccaaggaacattacgtgatgaccgaggttgatggtaaagcg
acgggctggagtgctttctacagtggcgggaaatgggctgcccaagagaaagaaaaagcc
aaagacaaaccgaaaaagaagaaagcctga
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