Hydrocarboniclastica marina: soil367_12600
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Entry
soil367_12600 CDS
T06192
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hmi
Hydrocarboniclastica marina
Pathway
hmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
soil367_12600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmi03019
]
soil367_12600
Enzymes [BR:
hmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
soil367_12600
Messenger RNA biogenesis [BR:
hmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
soil367_12600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UvrD-helicase
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QCF26704
UniProt:
A0A4P7XJH0
LinkDB
All DBs
Position
2803590..2804888
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AA seq
432 aa
AA seq
DB search
MSFESLDLRAELLRAVQDQKYTTPTDIQSQAIPIVMAGRDLMASAQTGTGKTAAFTLPLL
HRLAEKPVNGKRQVRALILTPTRELAQQVTDNVVAYSRHLRIHSAAIYGGTSIVGQMRKL
ARGVDILVATPGRLIDHMDRGTVDLSQVEMLVLDEADRMLDMGFMPAIERILKSVPAQRQ
TLLFSATFSPTITRLAQRFLKNPETVTTAKANSTADSITQVAYRVDGNRKRELLTHLIGT
NNWAQVLVFTRTKHGADRLARQLEEDGISSAAIHGNKSQGARTKALAQFKRKTVKALVAT
DVAARGIDIDNLPFVVNFDMPQNPEDYVHRIGRTGRGGQEGNAVSLVSGEENGQLAGVRR
LVGSELGAEIVEGFEPTQRARPKPSSDRPRAARPPRRPHGSDRPASKHGRPGDRPAHAKV
THKPRAPRTANR
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttgaatcactcgacctgcgcgccgaattgctgcgcgccgtacaagatcagaag
tacacgactcctacagatattcagtctcaggccattcccattgtcatggcaggccgggac
ctcatggccagtgcccagaccggcaccggcaaaaccgcagcctttaccctgcccctgcta
caccgtctggctgagaagccggttaacggcaagcgccaggtgcgggcactgatcctgacg
ccaacccgcgaacttgcccagcaggtcacagacaacgtggtcgcctacagccgtcacctg
cgcattcacagcgccgcaatctacggcggtaccagcatagtcggccagatgcgtaagctc
gcccgtggggttgatattctggtcgccacacccggccgcctgatcgaccatatggatcgc
ggcaccgtagacctgagccaggtagaaatgctggttctggacgaagcggaccgtatgctc
gacatgggtttcatgcccgccatcgagcgtatcctcaagtccgtgccggcgcagcgtcag
accctgcttttctcggcgaccttctccccaaccattacccggttggcccaacgcttcctg
aagaaccctgaaaccgtcacgacggccaaggccaactctacagctgattcgatcacgcag
gttgcctatcgggtggatggcaaccgcaagcgcgaactgctgacgcacctgatcggtacc
aataactgggcacaggtcctggtgttcacccgcacaaagcacggggcagaccggttggcg
cgccaactggaagaggacggcatatcctcagcagctatccacggtaataaaagccaggga
gcacgcaccaaggctctggcccagttcaagcgcaaaacggtcaaggcgctggttgccaca
gacgttgccgctcgcggtatcgatatcgacaacctgccgttcgtggtcaactttgacatg
ccacagaacccggaagactacgtccaccgtattggccggaccggtcgcggtggccaggaa
ggtaacgctgtgtcgctggtctctggggaagagaacggccagttggcgggcgtacgtcgc
cttgttggctccgagcttggtgccgagatcgtagagggcttcgagccaactcagcgtgcg
cgtcccaagcccagcagtgatcgtcctcgggcagcccggccgccacgccgtccccatggg
tcagatcggcctgccagtaagcatggccgtccaggcgatcggcctgcgcatgcgaaggtc
acccataagccacgggcaccgcgcacggctaatcgctaa
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