Hydrocarboniclastica marina: soil367_13310
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Entry
soil367_13310 CDS
T06192
Name
(GenBank) Ku protein
KO
K10979
DNA end-binding protein Ku
Organism
hmi
Hydrocarboniclastica marina
Pathway
hmi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
soil367_13310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hmi03400
]
soil367_13310
DNA repair and recombination proteins [BR:
hmi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
soil367_13310
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Motif
Pfam:
Ku
EF-hand_6
Motif
Other DBs
NCBI-ProteinID:
QCF26832
UniProt:
A0A4P7XKH0
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All DBs
Position
2973494..2974498
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AA seq
334 aa
AA seq
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MAQAIWKGQVSFGLLNVPVTLYSGEVRNDIKLRMLDSRNDARVRYERVNEETGDEVPWNE
IVKAYEYDKDNYVKIDQDELKEFLTEANNNVELESFIDATDLDPRFYEKPYYLVPQKKFE
KGYVLLRESLKQSGMIGIARVVIRTRNHLAAVIPYDDALILNILRFCEEVRALDNYNFPA
GDVSDYRISDKELKMSMDLINSMKTEWDPEDYHDEYRKRLLEYVEQKVSKAKPKKSKKSD
QPEPSSNVVDLQDLLRKSLEKNSKPKAPGKTSRKSNGDSDTGTKSGKTGSGKAASGARKS
ASGSKRATTGTARKQTKDNKADATAGTTSKRKTS
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atggctcaggctatctggaagggacaggtttcgtttggtcttctgaacgtaccggtaacg
ctgtattcaggcgaagtacgcaacgatatcaagttgaggatgctggacagccgtaatgac
gcccgggttcggtatgagcgtgtcaatgaggagaccggggacgaagtgccctggaatgag
attgtcaaagcttacgagtacgacaaggacaactacgtaaagattgaccaggacgagctc
aaggagtttctgaccgaagccaacaataacgtcgagctggagtctttcattgacgcgacc
gacctggatccccgtttttatgaaaagccctactatctggttccgcagaaaaagttcgag
aaaggctatgtgctccttcgggaatctctcaaacagagcggtatgatcggcatcgcccgc
gtcgtcatccgtacccgtaatcacctggccgcggtgataccttacgacgacgccctgata
ctcaacatacttcgcttctgcgaagaagtccgcgcgctggacaactataactttcccgct
ggcgacgtttcagattaccggatctccgataaggagctgaaaatgtcgatggacctcatc
aactcgatgaagaccgaatgggatccagaggactaccacgacgagtatcgcaagcgtttg
cttgagtacgtcgaacagaaagtcagtaaggccaagcccaaaaagagcaagaagtccgac
cagccggaaccgagcagcaatgttgtggacctgcaggatctgctacgtaagagcctggaa
aagaactcgaagcccaaggcacccgggaagaccagccgcaaatccaacggtgactcggat
accggaacaaagtcaggtaaaaccggttcgggaaaggccgcatcgggtgccaggaagtca
gcttcaggatcaaagcgggcgacgaccgggacggccaggaagcagacaaaggataacaaa
gcggacgcaacggcaggcacgacgagcaagcgcaaaacatcatag
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