Hydrocarboniclastica marina: soil367_16145
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Entry
soil367_16145 CDS
T06192
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hmi
Hydrocarboniclastica marina
Pathway
hmi03420
Nucleotide excision repair
hmi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
soil367_16145
03430 Mismatch repair
soil367_16145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hmi03400
]
soil367_16145
Enzymes [BR:
hmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
soil367_16145
DNA repair and recombination proteins [BR:
hmi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
soil367_16145
MMR (mismatch excision repair)
Other MMR factors
soil367_16145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QCF27337
UniProt:
A0A4P7XMJ3
LinkDB
All DBs
Position
complement(3620932..3623085)
Genome browser
AA seq
717 aa
AA seq
DB search
MDVTAILEPLNDAQREAVTAPGDHLLVLAGAGSGKTRVLVHRIAWLVKMEGLAPSSLMAV
TFTNKAAREMRGRIEEMLEIPTRGMWFGTFHGIAHRLLRAHHRDAELPENFQVLDSDDQL
RMVKRVMRELQVDETRWPPKQVQWFIGAQKDEGLRADHIDDNGDHYLTTMIRLYRQYEKH
CQRSGLVDFGELLLRSHELWLKKPELLHHYQQRFRHMLVDEFQDTNTIQYAWLRVLAGNR
VPLTVVGDDDQSIYGWRGAKIENIQQYQHDFPSARMVRLEQNYRSTQTILNAANAVIANN
QGRLGKELWTDGSEGEPIDLYTAFNEQDEANYIADTISDWANKGNRRSDCAILYRSNAQS
RVLEEALLRQAIPYRVYGGLRFYDRQEIRNALAYLRLVHYRHDDAAFERVVNIPARGIGA
KSLSLLREMAAAESLSLWQAAQRQLEVGALKGKARTGLERFIGLVEELAADAPDLPLHAL
AERAVRDSGLRDYHASERGEKGQARVENLDELVGATREYPSEEGVDTLAEFIAQAALDAG
EAQADEHEDSVQLMTLHSAKGLEFPLVFLTGMEEGLFPHGMSVEEPGRMEEERRLAYVGI
TRSMQKLVLTHAESRKLYGQEKFHALSRFVREIPPENLQEVRLRNTVSRPALMARPHEAT
GLADAGFRLGQRVTHPKFGEGVVMNAEGAGAQARVQVNFEEGAKWLVLAYARLEAIA
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggacgtcactgcaattctggaaccccttaatgatgcccagcgtgaggcggtcacggcc
ccgggcgaccatctgctggtgctggcgggcgccggcagcggtaagacgcgggttctggtt
caccgcatcgcctggctggtaaagatggaaggtctggcgcccagcagcctgatggcagtg
actttcaccaacaaggcggcgcgggagatgcggggccggatcgaggagatgctggagatt
cccacaagggggatgtggttcggcacgttccacggcatcgcccaccgcttgctgcgtgcc
caccatcgcgatgccgagctgccggaaaactttcaggtgctcgacagtgacgaccagcta
cgcatggtcaagcgcgtgatgcgggagctgcaggtagatgagacccggtggccgccgaag
caggtacagtggtttatcggcgcgcaaaaggatgaaggtctgcgggcagaccacatagat
gacaacggcgatcactacctgacaacgatgatccgcctttaccgccagtacgaaaagcat
tgccagcgtagcgggctggtcgatttcggcgagttactcctgcgttcccatgagctctgg
ctgaaaaaacccgagttgctgcaccactatcagcaacgttttcggcacatgctggtggat
gagtttcaggataccaacaccattcagtacgcctggctgcgggtattggcgggcaatcgg
gtgccgctgacggtcgtgggcgacgacgaccagtcgatctatggttggcgcggcgccaag
atcgagaatatccagcaatatcagcacgattttccatcggcaagaatggtccggctggag
cagaactatcgctcaacccagactatcctcaacgcagccaacgcggtaatcgccaacaat
cagggccggctgggcaaggaactctggaccgacggcagcgaaggcgagccgatcgacctc
tacacggctttcaatgagcaggacgaggccaactatatcgccgacaccatcagcgactgg
gcaaacaagggcaatcgccgcagtgactgcgccattctctatcgctcgaatgcgcaatcc
cgggtgctggaagaagcattgctgcgtcaggctattccctatcgtgtctacgggggcttg
cgcttctacgaccgacaggaaatccgcaatgcattggcctacctgcggctggtgcattat
cgccatgacgatgctgcatttgaacgcgtggtaaacatccccgcgcggggtatcggcgcg
aaaagtctttccctgctgcgcgagatggcagcagcagagagcctctcgttgtggcaggcc
gcccagcgccagctcgaagttggtgccttgaagggcaaagcccggactggactggaacgt
tttatcggactggtagaggaactcgccgcggatgcgccggacctgccattgcatgcgctt
gccgagcgcgcggtccgcgatagtggtttgcgggactaccacgccagcgaacgcggcgag
aaagggcaggcgcgggtggagaaccttgacgaattggtcggggctacgcgcgaatacccc
agcgaagaaggcgtggatactctggccgagttcattgcacaggccgcgcttgacgccggc
gaagcccaggccgacgagcacgaggacagcgtccagctcatgaccctgcattcggccaaa
gggcttgagtttccgctcgtctttctgaccggtatggaggaaggtctgtttccccatggt
atgtcggtggaagaaccgggaagaatggaagaggaaaggcgtctggcctacgtcggcatt
acccggtcgatgcagaagctggtgctgacccacgctgaatcacgcaaactttacggccag
gagaagttccacgccctgtcacgcttcgtgcgggaaattccgcccgagaacctgcaggag
gttcgcctgcgcaatacggtgtcccgtcccgcgctgatggcgcggcctcacgaggcgacg
gggctggctgacgccggcttcaggctgggacagcgtgttactcatcccaagtttggcgaa
ggtgtggtaatgaacgccgaaggggcaggggcccaggcccgggtgcaggtcaatttcgag
gagggcgccaagtggctggtgctggcctacgcccggcttgaggccatagcctga
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