Hydrocarboniclastica marina: soil367_16510
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Entry
soil367_16510 CDS
T06192
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hmi
Hydrocarboniclastica marina
Pathway
hmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
soil367_16510 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmi03019
]
soil367_16510 (pnp)
03016 Transfer RNA biogenesis [BR:
hmi03016
]
soil367_16510 (pnp)
Enzymes [BR:
hmi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
soil367_16510 (pnp)
Messenger RNA biogenesis [BR:
hmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
soil367_16510 (pnp)
Transfer RNA biogenesis [BR:
hmi03016
]
Prokaryotic type
tRNA degradation factors
soil367_16510 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
S1_RRP5
OB_RRP5_4th
S1_2
Motif
Other DBs
NCBI-ProteinID:
QCF27400
UniProt:
A0A4V1D944
LinkDB
All DBs
Position
3705014..3707137
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AA seq
707 aa
AA seq
DB search
MNPVKKSFQFGDHTVTLETGRIARQATGSVLVTVDDTSVLATVVAAKEAKPDQSFFPLSV
HYIEKAYAVGKIPGGFFKREGRMSEKETLTSRLIDRPIRPLFPKGFQNEVQVMLTVMSSN
KDVDPDIAAMIGASAALAVSGVPFNGPIGGARVGFTESEGYFLNPTYERLKTSDLNMVVA
GTKDAVLMVESEATGLTEDQMLGAVLFAHEAMQPVIENIRELAAAANVQKWDWQSVADNS
TLLDTLKGEYESAITEAYTISDKADRYARLAEIRKAAVEKLAGGEAPQYDADEVKSYFGK
LEKKIVRGRIIEGHPRIDGRDNKTVRPIEVEVGVLPNAHGSALFTRGETQALVAATLGTA
RDAQIIDALEGESKDTFLFHYNFPSYSVGEAGRVGPPGRREIGHGKLAKRGVQAVMPNAE
EFPYVIRIVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLIKEENGFAVLT
DILGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITEEIMEIALEQAHQARVHILDEMAK
VISTSREKLSEKAPSMLSLRIPSDKIRDVIGKGGATIRGLCEVTGASIDIEDDGLVRVYA
ANQAAAEDAINRIMEITAEIEVGQTYKGRVERIVDFGAFVNILPGKDGLVHISQIADRRV
ENVSDELSEGQEVLVKVLDVDARGRVKLSMKEVREGEKPVDFAPAGE
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccagttaaaaaatcatttcagttcggcgatcacaccgtcaccctagagaccggt
cgcattgctcgtcaggccaccggctctgtgctggtcaccgttgacgacacctccgtcctg
gcgaccgttgtagccgccaaagaagcgaagccggatcagtcctttttcccgttgagcgtg
cactacattgaaaaggcgtacgctgtgggcaagatcccgggcggcttcttcaagcgcgaa
ggccggatgtcggaaaaagaaacgctgacttcccgcctgattgaccgaccgattcgcccg
ctcttccccaaaggattccagaacgaagtccaggtcatgttgaccgtcatgtcgtccaac
aaagatgttgacccggatatcgctgcgatgattggcgcgtccgccgccctcgctgtttcc
ggggtacctttcaatggccccatcggcggcgctcgggttggttttaccgagagcgaaggc
tacttcctcaacccgacctacgaacgcctcaagacttctgacctcaacatggtcgttgcc
ggtacgaaagatgccgtgctgatggttgagtccgaagcgactggcctgaccgaagaccag
atgctcggcgccgtgctgttcgcccacgaggccatgcaaccggtcatcgagaatattcgc
gaactcgccgctgcagctaacgtccagaagtgggactggcagtccgtggccgacaacagc
accctgctggacacgctcaaaggcgaatacgaaagcgcgatcaccgaagcctacacgatc
agcgacaaggccgaccgttacgcccgccttgctgagattcgcaaggccgccgttgaaaaa
ctggcaggcggtgaagcgccacagtacgacgctgacgaagttaaaagctacttcggcaag
ctggagaagaaaatcgtacgcgggcggatcatcgaaggccatccccgtatcgacggccgt
gacaacaagaccgtccgtccgattgaagtcgaggttggcgtcctgcccaatgcccacggc
tcggccctgttcacccgtggcgaaacccaggcactggtggcagcgactctgggcacggcc
cgggatgcgcagatcatcgatgcgctggaaggcgaaagcaaggacaccttcctgtttcac
tacaacttcccgtcctactcagtaggtgaagccggtagggtcggacctccgggacgccgg
gaaattggccacggcaaactggccaagcgcggtgttcaggctgtcatgccgaatgctgag
gagttcccgtacgtaatccgtatcgtctccgagatcactgaatcaaacggttcaagttcc
atggcttccgtgtgcggtagttcgctggcattgatggacgcgggcgttccgctcaaggcc
ccggtcgccggtatcgccatgggcctgatcaaggaagaaaacggctttgccgtgctgact
gatatcctgggcgacgaagatcaccttggcgacatggactttaaagtcgccggtacccgt
gatggcgttactgcactgcagatggacatcaagatcgagggtatcaccgaagagatcatg
gagatcgcgctggagcaggctcatcaggcgcgcgttcacattctcgatgaaatggccaag
gtcatttctacttcgcgtgaaaagctgtccgagaaagcgccaagcatgctgagtctgcgg
atcccgtcagacaaaatccgcgacgtcatcggcaaaggcggcgccaccatacgcggcctg
tgcgaagtgactggcgcgtccatcgatattgaagatgacgggctcgtccgcgtctatgca
gccaatcaggcggccgctgaagatgctatcaaccgcatcatggaaattaccgcggaaatc
gaagtcggccagacctataaaggccgggttgagcgtattgtcgatttcggcgcgtttgtg
aatatcctgcccggcaaggacgggttggttcacatctcccagattgccgatcgccgtgtc
gagaacgtttccgatgagctttccgaaggccaggaagtcttggtcaaggtactggacgtc
gacgcccggggccgcgtgaagctcagcatgaaagaagtacgcgagggcgagaagcccgtc
gacttcgctccggctggcgagtag
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