Hydrocarboniclastica marina: soil367_17105
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Entry
soil367_17105 CDS
T06192
Name
(GenBank) thrombospondin type 3 repeat family protein
KO
K20276
large repetitive protein
Organism
hmi
Hydrocarboniclastica marina
Pathway
hmi02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
hmi00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
soil367_17105
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Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP3_bac
Cadherin_3
OMP_b-brl
OmpA_membrane
SIBA-E_N
He_PIG
Ig_SIBA-E_2nd
Motif
Other DBs
NCBI-ProteinID:
QCF27505
UniProt:
A0A4P7XKR9
LinkDB
All DBs
Position
complement(3840291..3845030)
Genome browser
AA seq
1579 aa
AA seq
DB search
MRKGSFLRRLKPAFAIGLVLFGCSASGAWASHFRGGSITWQALELDSDGQVNDVEVTIKT
AWALNGSNALSLNAPGLTFTQVGNDSIIDLGDSPEAAGKYTLRTAIFRAKDLDLTTSYPV
NFSACCRISTLVNNSDDPWNIQTVINLQDGNLAPKVELPIIFEVPQIQQDDAVLADWSFN
TGSTDPNADKLKFRLANVSEMGDPSATQPPGFSINPNTGTLSWTGSGTLAPGLYSAGIVA
EDLDSTGVIKSKSHVDFILYLQNKKAVQFTTSANVPETRNVIVEKGTTFSFDVTGTAIET
TSLGDVQGALSESAQTAGTFTFDPAALHPAAYPITFEVRDTTATATKSYLILNFIVPDPD
APRIANIEADRTIYGANVQQLVDKDLDAVVTDANNPDFNGGVLKFNVVFTDGQYEVLGVN
SVGDGAGEIRRDGRDIYYEGNLIGLVDSREDGAGRALKISFTSANATPAALTALVRSLTY
EDTFTLRSDSDRNLSIYLRDADGKSNSYSLYTDVQAHPDRPLSGGPVEAANRLSIVEGTS
YTLSTEELNYADPDTDPADIVLTPSSVVAGQFESISSPGIALVSFTQKEVDLGQVSFVHD
GSVSAPSYDISASDGTTATTPKAADITFTGLTDTDGDGVPDHVETTDEGTDPNDPKDVKD
TDGDGIPDYVEENQENTDPTDKKDYRDTDGDGVPDFVEVKEGTGPGDPKGYKDADGDGVP
DYYEQNVDGTDPNDPKNVKDTDGDGVPDYYETKIDGTDPLSKSSVKDRDGDQVPDYIEIF
VDGTDPETAAEFKDSDNDGIPDYVELFVTDSTPPVVSAPPAVTLQGTGLYTKVTRAQLES
LGIASASDGKDSGNCCSPYPKSLVDNEPFFPPGRHKIVWAAQDAAGNIGQASQILDIKPL
VSLGKDQTLPEGATGSIRIILNGRAPEYPVRVPFTVSGSATHPEDHNLVSGEALIESGLE
VTVPIRLVADAVPEADETVVVKLGEGVNRGPNFRHRLTISERNIAPQVQLVVSQSDSERL
TVLRDGGLVHVLSMVSDANAKDVHSYSWDIGFLQDLDDDPSIVTIDPSSLELGKAYPIHL
TVSDSGSPVLRKSVGVTLKAMDELKTLSASADSDGDGVADADEGYQDTDQDGIPDYLDSS
GNDCSVVPEQIADQQRYLMESDAGTCLKLSNYSLFAVNGGANLMEQEDIAQQLQSSIYVD
TDVKNVGGIFDFSVDQLPDAGQSVHIAIPQRAAIPENAVYRKFDTVRRWHDFTVNGANRL
SSAAGEPGFCPPAGSALYTAGLTAGDWCVQLTIEDGGPNDADGEPNGTVVDPGGVGVIAG
LDNGGTVRTSGGGGAVGLAGLLVLLGIGAVGRKKARSGPSASRSCLGLMLAGTFTAAMVA
QPATVQAAERELEPLYLTANLGYAFTDISEGDMDRRFTAAGYDAETLSTDGSRFGWSIGG
GYRFTDRIALEVGFIDLGDVDVSFRSTPIDRAVSDVHPESGHGPAVSMLYRHPVSERLGV
SARLGMFFWEGDFKTSQSEARVGNSSEKGQDFYYGLGLDYTYNREWSLLTEIQRFEFDRD
ASYFPSVGVVFRFPEWLKK
NT seq
4740 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaaggaagctttttgcggaggctcaaaccagcctttgcgattgggcttgtgttg
tttggctgtagcgcttcaggggcctgggccagccattttaggggcggttctattacctgg
caggctttggagctggatagcgacggccaggttaacgatgtcgaagtcaccatcaagacc
gcatgggccctcaatgggtcgaatgcgttgtctctgaatgcgcccggtctgacctttacc
caggttggcaatgattcgatcatcgacctgggcgacagccccgaagctgcgggaaagtat
acgctgcgcaccgctatcttccgggcaaaagacctcgacctgacaacctcttatcccgtt
aacttcagcgcgtgttgccgcatatccacgctggtgaataacagcgacgacccctggaac
atccagaccgttattaacctccaggatggcaacctcgcgcccaaggtagagctgccgatc
atcttcgaggtaccgcagatacaacaggacgacgccgtgttggcggactggtccttcaac
actggctccacggatcccaatgccgacaagctcaaattccgcctggcgaacgtcagcgag
atgggcgaccccagcgctacccagcctccaggcttctcgatcaatcccaataccggcacc
cttagctggaccggttcaggcacccttgcgccgggcctctacagcgctggcattgtggct
gaagatctcgactctacaggcgtcatcaagtcgaagtcgcacgtggactttattctttac
ctgcagaacaagaaagcggtgcagttcaccacctccgctaacgtgcctgaaacgcgaaac
gtcattgtcgaaaaagggacaaccttctcgtttgacgtcaccggaacggctatcgagacc
acgagtcttggtgatgttcagggtgccctgagcgagtcagcgcaaactgcgggaaccttc
acctttgatccggcagccctccacccggcggcgtaccctattacatttgaagtacgtgac
acgacggcgaccgctaccaagagctatctcatcctgaactttatcgtgccggatccggac
gcgccccgtattgccaacattgaagctgaccggaccatttatggtgcgaacgtgcagcaa
ctggtagacaaggatcttgacgcggttgtcaccgacgccaataacccggacttcaacggc
ggtgttctgaagttcaacgtggtcttcaccgatggccagtacgaagtgctgggggttaat
tccgtgggcgacggcgcgggtgagatccgccgagacggacgcgatatctattacgagggc
aacctcatcggcctggtcgattcccgcgaagacggagccggaagagcgctgaagatcagt
tttacttccgccaatgcgacgccggctgcgctgaccgcgctggtgcgtagcctgacctac
gaggatacctttacgctgcgttccgatagcgaccgcaacctgtcgatctacctgcgcgac
gccgacggcaagagtaattcgtacagtttgtataccgatgttcaggcacatccggaccgt
ccgctttcaggcggccctgtagaagcggccaaccggctgtccatcgtcgagggcaccagc
tataccctcagcacagaggaactgaattacgcggatcccgatactgatccggccgatatt
gtcctgacgccctcaagcgtagtcgcgggccagtttgaatccatcagttcgcccggcatc
gctctggtcagtttcacccagaaagaagtcgatctgggccaggtctcgttcgtgcatgac
ggcagtgtttcggcgccgagttacgacatttctgccagcgacggcaccactgcgacaaca
cctaaagctgctgacataacctttacgggtcttaccgataccgacggtgatggcgtgcct
gaccatgttgaaacgacggatgagggtaccgatcccaacgacccgaaagacgtcaaggac
acggacggcgacggcattccggattacgtcgaggagaaccaggaaaacactgatccgacc
gacaagaaagactaccgtgataccgacggcgacggcgtacccgattttgttgaagtgaag
gaaggtaccggcccgggtgaccccaaggggtacaaggatgccgatggtgacggcgttccc
gattattacgagcagaacgtcgatggcaccgatccgaatgaccctaaaaatgtcaaagat
accgatggtgatggggtgcccgactattacgaaaccaagatagacgggaccgatccgctt
tcaaagtccagcgttaaggaccgggacggcgaccaagtgcccgattacatcgagattttc
gtggacgggaccgatccagagacagcggcagagttcaaggattccgacaatgacggtatt
ccggattacgtggagcttttcgtcacggacagcacaccaccggttgtctccgcgccacct
gcggtaacactgcagggaacagggctgtataccaaggttacccgtgcacagcttgaatcg
ctgggtattgcatcggcctccgacggcaaagacagcggtaattgctgcagtccgtacccc
aagtcactggtcgataacgagccgttcttcccaccgggaagacacaagatcgtctgggcg
gcccaggatgcagccggcaacatcggccaggccagccagattctggacatcaagccgctg
gtcagcctgggtaaggaccagacgctgccagaaggcgcgaccggctcgatccggatcatt
ctgaacggtcgggcgcctgaatacccggtacgtgtacctttcacggtgagcgggtcggcc
acccatccggaagatcacaacctggtgtccggtgaagcgcttatcgaatcaggtctcgag
gtgacggtgccgatacgtcttgtagccgatgcagtaccagaagctgatgagaccgtcgtc
gtgaagctcggggaaggcgttaaccggggtcccaacttccgccaccgcctgaccatcagc
gagcgtaatattgccccgcaggtgcaactggtcgtcagccagagcgacagcgagcgtctt
acggtcctgcgtgatggtgggctggtccatgtgctgagtatggtttctgacgcaaacgca
aaggacgtgcacagctatagctgggatattggcttcctgcaggacctcgatgacgatccc
agtatcgttacgattgacccgagcagcctggagctgggcaaggcctatccgatccacctg
acggtcagcgacagtggtagcccggtgctgcgcaaaagtgtcggcgtgacccttaaggcg
atggacgaactgaagacgctttctgcttcagctgatagcgacggcgacggggttgccgat
gcggatgaaggctatcaggacacggaccaggacggcattcctgactatctggacagcagt
ggcaacgactgtagcgtcgtgcctgaacagatcgctgatcagcagcgctacctgatggaa
agcgacgccggcacctgtctgaaactgagtaactactcgctgtttgccgtaaatggtgga
gctaacctcatggagcaggaagatatcgcccagcagctgcagagttcgatctatgtcgat
accgacgtgaagaacgtgggcgggattttcgacttcagtgttgatcagttgcctgacgcc
ggacagagtgtccatattgcgataccacagcgcgcggcaattcctgaaaatgctgtttac
cgcaagttcgacaccgttcgccgctggcatgactttaccgtcaacggcgccaaccggttg
agttcggcagccggtgagccagggttctgtccgcctgcgggtagcgctttgtacaccgca
gggctgacggcaggagactggtgcgttcagttgaccatcgaagatggtggcccgaacgat
gctgatggcgagcctaacgggacggtcgttgatcccggcggcgtcggcgtgattgccggt
ctcgataatggtggcacggtgcgcacttcaggcggtggcggcgcggttggtctggcgggt
ttgctggtgctgttgggcatcggcgcggtggggcgcaaaaaggccagatctggcccaagc
gccagccgttcctgcctgggactgatgcttgcaggaacctttaccgcggccatggttgcg
cagcccgcaaccgtgcaggcggctgaaagggagcttgagcctctgtacctgacagccaac
ctgggttacgccttcaccgacatcagtgaaggcgacatggaccggcggtttaccgccgcc
gggtacgatgccgagacactgtcaacggacggcagccggtttggctggagtatcggcggt
ggctaccggttcaccgaccggattgcccttgaggtcggctttattgaccttggcgacgtg
gatgtgagtttcaggtctacgccgatcgaccgggcggtctcagatgttcatccggaatcc
ggtcatggccctgcagtgtcgatgctctatcgacacccggtctctgagcggttgggcgtc
agcgcgcgcctgggtatgttcttctgggaaggcgacttcaagaccagccagagtgaagcc
agagtcggcaacagtagcgagaaaggccaggacttctattacgggctgggactggactac
acctacaaccgcgaatggtcgttgctaacggaaattcagcgtttcgaattcgaccgggat
gccagttactttccgtcggtgggtgtcgtcttccggtttccagagtggttgaaaaagtag
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