Haematobacter massiliensis: HmaOT1_03295
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Entry
HmaOT1_03295 CDS
T05861
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hml
Haematobacter massiliensis
Pathway
hml03420
Nucleotide excision repair
hml03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HmaOT1_03295
03430 Mismatch repair
HmaOT1_03295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hml03400
]
HmaOT1_03295
Enzymes [BR:
hml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HmaOT1_03295
DNA repair and recombination proteins [BR:
hml03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HmaOT1_03295
MMR (mismatch excision repair)
Other MMR factors
HmaOT1_03295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QBJ25252
LinkDB
All DBs
Position
323644..326073
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AA seq
809 aa
AA seq
DB search
MSEWDDEAEAFESAAEGRGAKVPLSRRAMAMRPAPYLNDLNPAQREAVETLDGPVLMLAG
AGTGKTKALTARIVHILNTGRARPDEILAVTFTNKAAREMRERVGRLLGGVGEGMPWLGT
FHAISVRLLRRHAELVGLKSNFTILDTDDQVRLLKQLIVAAGIDEKRWPARQLAGVVEGW
KNRALTPDRVPAADAGAFNRRGVELYAAYQDRLKVLNAVDFGDLLMHVVTIFQSYPDVLE
GYQRRFRYILVDEYQDTNVAQYLWLRLLAQAHRNICCVGDDDQSIYGWRGAEVGNILRFE
KDFPGARVIRLEQNYRSTPHILAAASGLIEANESRLGKTLWTDAPDGEKVRVIGHWDGEE
EARWIGEEIEALLGTHRAVGPKTLDDMAILVRASHQMRAFEDRFLTIGLNYRVIGGPRFY
ERLEIRDAMAYFRLAVSPDDDLAFERIVNTPKRGLGEKAQALIQSTARARGLTLVRAAKY
LVEAGEIRGKGGTELRTLVAAIGRWHAEALAPADLPEDAVVEPLRAGAGRSRSHVELAET
ILDESGYTAMWQNEKTPEAPGRLENLKELVKALESFDGLQGFLEHVALIMDNEQEEGTPK
VSIMTLHAAKGLEFPVVFLPGWEDGLFPSQRAMDESGLKGLEEERRLAYVGITRARELCT
ISFASNRRVYGQWQSQMPSRFIDDLPEEDVEVLTPPGLYGGGYGAAGFAAMEAKAASADV
YNSPGWRRMQERAARRPTAQPRESRGPVIDLDAVSPFAVGDRVFHQKFGYGAVTAVEGDK
AHVQFDKAGEKNVMSAYLVRADQADDVPF
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaatgggatgacgaagccgaggcgttcgagagcgccgccgaaggtcggggggca
aaggtgccgctctcccgccgcgcgatggccatgcgccccgccccttatctcaacgatctc
aatcccgcccagcgggaggcggtggagacactggacgggcccgtgctgatgctcgcaggg
gcaggcaccggcaaaaccaaggcgctcaccgcgcgtatcgtgcacatcctgaacactggt
cgcgcccggcccgatgaaatcctcgccgtcaccttcaccaacaaggctgcgcgggaaatg
cgggagcgggtgggccggctgctgggcggcgtgggggaggggatgccctggctcggcacc
ttccatgcgatctccgtgcggctcctcaggcgccatgcggaactggtagggctgaagtcg
aacttcaccattctcgacacggacgatcaggtgcgtctgctcaagcagctcatcgtggcc
gcgggaattgacgagaaacgctggccggcgcggcagctcgccggagtggtggaaggctgg
aagaatcgcgccctgacaccggaccgggttccggcggcggatgcgggggccttcaaccgc
cggggggtggaactctatgccgcctatcaggaccgcctgaaggttctgaacgccgtcgat
ttcggcgacctgctcatgcatgtcgtgacgatctttcagagctatcccgacgttctggaa
gggtatcagcgccgcttccgatacattctggtcgacgagtatcaggataccaacgtcgcg
cagtatctgtggctacggctgcttgcccaggcgcatcgcaacatctgctgcgtgggtgac
gacgatcagtcgatctatggctggcgcggcgccgaagtcggcaacatcctgcggttcgag
aaggattttcccggcgcgcgggtgatccggctggagcagaactaccgctccacgccgcat
atcctcgccgctgcctccgggctgatcgaggcgaacgagagccggctcggcaagaccttg
tggacggatgcgccggatggcgagaaggtccgcgtcatcggccattgggatggcgaggag
gaggcccgctggatcggggaggagatcgaagccctccttggcacgcatcgcgcggtgggg
cctaaaacgctggacgatatggcgatcctcgtccgcgcctcgcaccagatgcgcgcgttc
gaggaccggttcctgaccatcggcctgaactaccgggtgatcggcggtccgcgcttctat
gagcggttggagattcgcgatgcgatggcctatttccgcctcgccgtcagcccggacgac
gatctggccttcgagcggatcgtgaacacgccaaagcgaggtctgggggagaaggcgcag
gcgctgatccagtccacggcgcgggcgcgggggctgacactggtccgcgcggcgaaatat
ctggtcgaggctggggagatacgcggtaagggcgggacggagcttcgcacgctcgtcgcc
gcgatcgggcgctggcatgcggaggcgctggccccggcggatctgcccgaagacgcggtg
gtggagccgctgcgcgcgggcgcgggccggtcgcgctcgcatgtggagctggcggaaacc
attctggacgaatccggctataccgcgatgtggcagaacgaaaagacgcccgaagctccc
ggacggttggagaacctcaaggaactcgtgaaggcgctggagagcttcgacgggcttcag
ggcttccttgagcatgtcgcgctcatcatggacaacgagcaggaggaggggacgcccaag
gtctccatcatgacgctccatgccgcgaaggggctggagtttccggtggtctttctgccg
gggtgggaggatggcctgttcccctcgcagcgcgcgatggatgagagcggcctgaagggt
ttggaggaggagcggcggctggcttatgtcggcatcacccgcgcgcgggagttgtgcacg
atctccttcgcctctaaccggcgcgtctatggccaatggcaatcccagatgccctcccgc
ttcatcgacgatctgccggaggaggatgtggaggtgctgacacccccgggcctttacggc
ggcggctatggggcggcgggctttgcggcgatggaggccaaggcggcctctgccgatgtc
tacaactctcctggctggcggcggatgcaggaacgtgcggcgcgacgtcccacggcccag
ccccgggaatcacgcgggccggtcatcgatctggatgccgtatcgcctttcgccgtgggc
gacagggtgttccatcagaagttcggctatggcgccgtgactgctgtggagggcgacaag
gcccatgtgcagttcgacaaggcgggggagaagaatgtcatgtcggcctatctcgttcgt
gccgatcaagccgacgacgtgccgttctga
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