Haematobacter massiliensis: HmaOT1_04035
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Entry
HmaOT1_04035 CDS
T05861
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
hml
Haematobacter massiliensis
Brite
KEGG Orthology (KO) [BR:
hml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hml03016
]
HmaOT1_04035 (rnd)
Enzymes [BR:
hml01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
HmaOT1_04035 (rnd)
Transfer RNA biogenesis [BR:
hml03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HmaOT1_04035 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
wHTH-Calcineurin_assc
MDMPI_C
Motif
Other DBs
NCBI-ProteinID:
QBJ23500
LinkDB
All DBs
Position
481402..482589
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AA seq
395 aa
AA seq
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MAESLPETTVKTLTTSEELAAFCDRAKGQPYIAIDTEFLRERTYYSKLCLVQLALPGKTG
EAVLVDPIAGEVSMEPLYELFRDESIIKVFHAARQDLEIFFVQGNVLPKPLFDTQVAAMV
CGFGEQVAYETLVRKIAHESLDKTSRFTDWSRRPLTPAQKTYAIADVTHLRVIYEVLARQ
LAETGRQKWVEEEIAVLLDPETYVVRPNEAWQRVKTRTNSGRFLAVVRELARFREEYAQG
HNVPRSRVYKDDALLELASTKPTTAEELGRSRLLQREARRGEVAEGILDSVRQGLARKPE
ELPHIEENREQLNVNPALADLLRVLVKAKAEEAGVAQKLIATATDLDAIAAGRRDVPALK
GWRNEVFGEDALRLCRGEIALTARGQNVRVISLKD
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atggcagagtccttgcccgaaaccactgtaaagacactcacaacttccgaagagctggcc
gctttctgcgaccgggcgaaggggcagccctatatcgccatcgataccgagttcctgcgc
gagcgaacgtattattcaaagctctgcctcgtccagttggcccttcccggcaagaccgga
gaggccgtgctggtagatcccatcgcgggcgaagtttcgatggagccgctctacgagctt
ttccgcgatgaaagcatcataaaggtgtttcacgccgcgcggcaggatctggagatattc
ttcgttcagggcaacgttctgcccaagccactgttcgatacgcaggtcgccgccatggtc
tgcggcttcggcgagcaggtcgcttacgagacgctggtgcgcaagatcgcgcacgagtcg
ctcgataagacctcgcgcttcaccgattggtcccgccggccgcttacgcctgcgcagaag
acctacgcgattgcggatgtgacccatctcagggtgatctacgaggtgctggcgcggcag
cttgccgagactggccggcagaaatgggtggaggaggaaatcgccgttcttcttgacccg
gaaacctatgtcgtacggcccaatgaggcctggcagcgggtcaagacccggacgaattcg
ggccggtttctcgccgtggtgcgcgagctggcgcggttccgggaggaatatgctcagggc
cacaacgttccccggtcgcgtgtctacaaggatgacgcgcttctggagctggcctccacc
aagccgacgacagcggaagagctgggacgctcccgcctcctgcagcgtgaagcgcggcgg
ggtgaggtggcggagggaattctggactcggttcgccagggactcgcccggaagcccgaa
gagcttccgcatatcgaggagaaccgcgagcagctgaacgtcaatcccgctttggctgat
ctgcttcgggtgctggtgaaggccaaggcggaggaggcaggcgtagcgcagaagcttatc
gccaccgcgaccgacctggatgcgattgcggcgggccgccgcgatgtgccggctctcaag
ggttggcgaaacgaagtgttcggcgaagatgctcttcgtctatgccggggcgaaatcgcg
ctgaccgctcgtggacagaatgtcagggtaatttccctgaaagattga
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