Haematobacter massiliensis: HmaOT1_04140
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Entry
HmaOT1_04140 CDS
T05861
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
hml
Haematobacter massiliensis
Pathway
hml03030
DNA replication
hml03410
Base excision repair
hml03420
Nucleotide excision repair
hml03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HmaOT1_04140 (polA)
03410 Base excision repair
HmaOT1_04140 (polA)
03420 Nucleotide excision repair
HmaOT1_04140 (polA)
03440 Homologous recombination
HmaOT1_04140 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hml03032
]
HmaOT1_04140 (polA)
03400 DNA repair and recombination proteins [BR:
hml03400
]
HmaOT1_04140 (polA)
Enzymes [BR:
hml01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HmaOT1_04140 (polA)
DNA replication proteins [BR:
hml03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HmaOT1_04140 (polA)
DNA repair and recombination proteins [BR:
hml03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
HmaOT1_04140 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HmaOT1_04140 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Taq-exonuc
Motif
Other DBs
NCBI-ProteinID:
QBJ25264
LinkDB
All DBs
Position
506030..508831
Genome browser
AA seq
933 aa
AA seq
DB search
MPFGKGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLFKYVDGNNSSADA
ATHLAVIFDYSSKTFRNDIYPLYKANRPELPEDLRPQFPLTREAVRAFSIPCIEIEEYEA
DDIIATLACRARDAGGRVTIISSDKDLMQLVGDGVEMLDAMKNRRIGPEEVEEKFGVPPA
KVVDVQALAGDSVDNIPGAPGIGIKTAALLIQEYGDVETLLERAGEIKQPKRRETLLNNA
EQIRISRRLVELHCDMPLDCDLATLEVQEPEAEVLMDFLARMELRTLTKRIADRKGILPP
AVSDVPPADEEPAEAVEEPPFTPADYVWIRDMDTLEAWIAEIRDTGLVAFDTETTSLDEM
RAELVGISLATAPGRAAYIPLSHRVGEGDLFGGSDLAEGQLPLDMVVDALRPVLEDAAIL
KIGQNVKYDLKILRRYGIDVAPIDDTMLMSYAMNSGLHNHGMDVLAESYLQHQCIPIKSL
IGSGKSQITFDRVPVAEAVKYAAEDADVTFRLWRRFKPQLHRARVTTIYETLERPLVPVL
AGMEMAGILVNRDALSRMSNAFAQKMAGLEAEIHELAGEPFNVGSPKQLGEILFERMSLA
GGSKGKNGAYGTGADILEDLAAEGHDLPARVLDWRQLSKLKSTYTDALQTHIHPETGRVH
TSYSIAGANTGRLASTDPNLQNIPVRTEEGRRIREAFVAQPGCKLVSLDYSQIELRILAH
VAEIPELRTAFDEGLDIHAMTASEMFGVPIEGMDPMIRRQAKAINFGVIYGISGFGLARN
LRIPRDQAQRFIDTYFERFPGIRGYMNGTIEFAKKHGFVRTLFGRKIHTPEINAKGPTAG
FARRAAINAPIQGTAADVIRRAMIRVPQTIADLPAKMLLQVHDELVFEVEDRAVEELIGR
VRAVMEGAALPAVELSVPLVVDAGWGDNWAEAH
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
gtgcccttcggcaaggggcatcacctgcacctgatcgacggttccgccttcatctttcgc
gcctatcatgccctaccgccgctgacccgcaagtcggacggcctgccgatcggtgcggtc
gcgggcttctgcaacatgctgttcaaatatgtggacggcaacaacagctccgccgatgcg
gccacgcatctcgcggtgatcttcgactattcgtccaagacattccgcaacgacatctac
ccgctctacaaggcgaaccgcccggaactgccggaggatctgcgccctcagttccccctc
acccgcgaagcggtccgcgccttcagcatcccctgtatcgagatcgaggaatacgaagcc
gacgacatcatcgccacgctggcctgccgggcgcgcgatgcggggggccgggttacgatc
atctcctccgacaaggacctgatgcagctcgtcggcgacggggtggagatgctggatgcg
atgaagaaccgccgcatcgggccggaggaggtcgaggagaaattcggcgtcccgcctgcc
aaggtggtggatgtgcaggctctggccggcgactcggtggacaatatccccggcgcgccg
gggatcggcatcaagaccgcagcgctgctcattcaggaatacggcgacgtggagacgctg
ctggagcgggcgggtgagatcaagcagccgaagcggcgggagacgctgctgaacaatgcg
gagcagatccgcatctcccgcaggctggtggaactgcattgcgacatgccgctcgattgc
gatctggcaacgctggaagtgcaggaaccggaggcggaggttctgatggacttcctcgcc
cggatggagcttcgcaccctgacgaagcgcatcgcggaccggaagggcatcctgccgccc
gccgtctccgacgtgccgcccgcggacgaagaaccggcggaggcagtggaggagccgccc
ttcacgcctgccgattacgtgtggatccgggatatggacacgctggaggcctggatcgcg
gaaattcgcgatacggggctcgtggcctttgacacggagaccacctcgcttgacgagatg
cgggccgagctggtcggcatctcgctggccaccgcgccgggtcgcgcggcctatatcccg
ctgtcccaccgggtgggggagggcgacctgttcggcggttccgatctggcggaggggcag
cttccgctggacatggtggtcgatgctctccggcccgtgctggaggatgccgcgatcctc
aagatcggtcagaacgtgaaatacgatctgaagatcctgcgccgctacggcatcgacgtg
gctccgatcgacgacacgatgctgatgtcctatgcgatgaattccgggctgcacaatcat
gggatggatgtgctggcggaaagctatcttcagcatcagtgcattccgatcaagtcgctg
atcggttcgggcaagagccagatcacctttgaccgcgtaccggtcgcggaggcggtgaaa
tatgccgcggaggacgcggatgtcaccttccggctctggcggcggttcaagccgcagttg
cacagggcgcgggtgaccacgatctatgagacgctggagcgcccgctcgttccggtgctc
gcgggcatggaaatggcggggatcctcgtcaaccgcgacgcgctctcccgcatgtcgaac
gcttttgcgcagaagatggccgggctggaggcagagatccatgagctcgcgggggagcct
ttcaacgtgggctcgccgaagcagctgggggaaatcctgttcgagcgcatgagcctggcg
ggcggctccaagggcaagaacggcgcctacggaacgggggcggacattcttgaggatctg
gctgcggaaggtcatgacctgcccgcgcgggtgctggactggcgccagctttccaagctc
aagtcgacctatacggatgcgctgcagacccatatccacccggagacgggccgcgttcat
accagctactccatcgccggggcgaacaccgggcgtctcgcctccaccgatccgaacctg
cagaacatccccgtgcggacggaggaaggacggcgcatccgcgaggccttcgtggcccag
ccgggctgcaagctcgtctctcttgactacagccagatcgagcttcgcatccttgcccat
gtggcggaaatcccggagctccgcaccgcctttgacgaagggctggacatccatgcgatg
accgcctccgagatgttcggggtaccgatcgaaggtatggatccgatgatccgtcggcag
gcgaaggccatcaacttcggggtgatctacgggatttccggtttcggtctcgcccggaac
ctgcgcatcccgcgcgatcaggcacagcggttcatcgacacttatttcgagcggtttccc
ggtatccggggatatatgaacggcacgatcgaattcgcgaagaaacacggtttcgtccgc
acgctgttcggccgcaagatccatacgccggagatcaacgccaaggggccgaccgcaggt
ttcgcccgccgcgcggcgatcaacgcccccattcagggcactgccgccgatgtgatccgc
cgggccatgatccgcgtgccgcagaccatcgcggatctgcccgccaagatgctgctccag
gtgcacgacgaactagtgtttgaggtggaggatcgcgcggtggaggaactcatcgggcgt
gtccgcgccgtcatggagggtgcggctctgcctgctgtcgagctttccgtgccgctggtg
gtggatgcgggctggggtgacaactgggcggaggcgcattga
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