Haematobacter massiliensis: HmaOT1_06385
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Entry
HmaOT1_06385 CDS
T05861
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
hml
Haematobacter massiliensis
Brite
KEGG Orthology (KO) [BR:
hml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hml03019
]
HmaOT1_06385 (hrpB)
Enzymes [BR:
hml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HmaOT1_06385 (hrpB)
Messenger RNA biogenesis [BR:
hml03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HmaOT1_06385 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
CON_HrpB
HA2_N
AAA_19
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QBJ23911
LinkDB
All DBs
Position
complement(975121..977586)
Genome browser
AA seq
821 aa
AA seq
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MAEGWSPLPIDAVLPALSEAVAKAGCAVLQAPPGAGKTTRVPLALLPQVRGRIVMLEPRR
LAARAAAERMAETLGEKVGETVGYRVRGESRIGPKTRIEVVTEGILTRMIQSDPELSGVG
AVIFDEFHERSLNADLGLALTWEARSALRPELIVIVMSATLDAAPVARLLEDAPLVTSEG
RAFPVETRWLPAPLRAGTRLAPAIAALVTQAAAETEGDILVFLPGEGEIRQVAALLDIPG
ATVRPLYGALPFAEQRAAIAPATQGRKIVLSTAIAETSLTIEGVRVVVDGGRARRARFDP
GSGMSRLVTERVTRAEAEQRRGRAGRVAPGICYRLWAKGEEGALPAFPPPEMETADLAPL
AMELALWGTSDGGGLAFLTPPPAPALAEARALLHDLGALDDAGRVTEHGRQLAPIPLHPR
LGHMLLLSGRKAAPLAALMAARDPLRGAPADLSLRLEAVHDLRAYADRRPWPADRATVET
IRQEARRLSRLTEAEGPEMTPGEMASLAYPDRIGLRRKGETPRWLLSGGKGVTIAAGDPM
AGQRLLIATDLSGTAREPTIRQAVDITEAGVRRFHGERIGWEDVCLWSPRERRVIARRQE
RLGSIILGDRIWQDAPEERVAEALLDGVRDLGLSSLGWTEAAERFRARVELLRAEGVDLP
DMSDAGLTAGVQDWLLPHLAGRRSAGDLKALDPLEPLRQMLGWEEMQTLDRLAPGHFTTP
LGNRIPLDYRGGVPGIEVRLQEMFGVTEHPAIGPKRLPLRVTLLSPARRPVQVTTDLPRF
WATSYADVRKDMRGQYPRHPWPEDPTQAEPTLRAKPRGQTA
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atggctgagggctggtcaccgcttcccatcgacgccgttctgcccgcgctgtcggaggca
gtggcgaaggcgggctgcgccgtcctgcaggccccgcccggcgcgggcaagaccacacgg
gtgccgctcgccctgctgccgcaggtgagaggccggatcgtgatgctggagccgcgtcgc
cttgccgcccgcgcggcagccgaacgcatggccgaaaccttgggcgagaaagtgggagaa
accgtgggctaccgggtccggggtgaaagccgcattggcccgaagacccggatcgaggtc
gtgacggagggtattcttacccgcatgatccagtccgatccggagttgtccggtgtaggt
gccgtgatctttgacgagtttcacgaacgctccctgaacgccgacctgggccttgccctg
acatgggaggcaaggagcgccctgcgccccgagctcatcgtcatcgtgatgtccgcgacg
ctggatgcggcgcccgtcgcgcggctgctggaggacgcaccgcttgtcacctcggaaggc
cgggcctttccggtagagacgcgctggctgcccgcgccactgcgcgccggaacccgcctc
gctcccgccattgccgcgctcgtcacgcaggcggcagcggagacggagggcgacatcctc
gtctttcttcccggagagggagagatcaggcaggtcgccgcgctgctcgacatcccgggc
gcgacggtgcgcccgctctacggggcgctccccttcgcggagcagcgtgccgccatcgcc
cccgcaacacaggggcgcaagatcgtgctctccaccgccatcgcggaaacatccctgacc
atcgaaggcgtgcgtgtcgtggtggatggggggcgtgcgcggcgggcacggttcgatccc
ggttcaggcatgagccgcctcgtgacggagcgggtgacccgggcggaagcggagcagcgc
cggggccgcgcaggtcgtgtggcgccgggcatatgctaccgcctctgggccaagggggag
gaaggcgcgcttcccgcctttccaccacctgagatggagacggccgatcttgctccgctt
gccatggaactcgcgctctggggcacctcggacggtggcgggctggccttcctgaccccg
ccgcccgcgcctgcgctggccgaagcacgggcgctgctgcatgatctcggagcgctggat
gatgcggggcgcgtcacggaacacgggcggcaactggcccccataccgctgcacccccgc
cttggccatatgctgctgctctcgggccggaaggccgcgccgctggcagcgctgatggcg
gcgcgggaccccctccggggggcgcccgcggatctctctctgcggctggaggccgtgcac
gacctgcgcgcctatgccgaccgccgcccctggcctgccgatcgcgcgacggtagaaacg
atccggcaggaagcgcggcggctctcccggctgacggaggccgaagggccggagatgaca
cccggcgaaatggcctccctcgcctatcccgaccgcatcggtctccggcgcaagggcgaa
acaccgcgttggctgctgtcggggggcaagggcgtgaccatcgcggcgggcgacccgatg
gcgggccagcgcctgctgatcgcgaccgatctgagcggtaccgcccgggagccgacgatc
cggcaggccgtggacatcaccgaggcgggtgtgcggcgctttcacggcgagcgcatcggc
tgggaggatgtctgtctctggtcaccgcgtgagcgtcgcgtcatcgcccggcgtcaggag
cggctggggtccatcatcctcggcgaccgcatctggcaggacgcgccggaggaacgggtg
gcagaggcgctgctggacggggtgcgcgatctgggtctctcctccctcggctggacggag
gcggcggagcggtttcgcgcgcgcgtcgaactgcttcgggcggagggtgtggacctgccc
gacatgtccgacgccgggctgaccgcaggggtgcaggactggctcctgccgcatctggcg
gggcggcggtcggcgggagatctgaaggcgctcgacccgctggaaccgctccgtcagatg
ctggggtgggaggagatgcagaccctcgacaggttggcgcccggccacttcaccacaccc
ctcggcaaccgcatcccgctcgactatcgcggcggcgtgccgggcatcgaggtgcgattg
caggaaatgttcggcgtgacggagcatcccgccatcgggccgaagcggctgccgctccgc
gtcacgctactttctccagcgcgccgccctgtacaggtgacgaccgacctgccgcgtttc
tgggccacgagctatgcggacgtgcgcaaggacatgcggggccagtatccccgccacccg
tggcccgaggatccgacccaagcagaaccgaccttgcgggcaaaaccccgcggacagacg
gcctga
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