Helcobacillus massiliensis: R3I40_01655
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Entry
R3I40_01655 CDS
T09498
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hmm
Helcobacillus massiliensis
Pathway
hmm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R3I40_01655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmm03019
]
R3I40_01655
Messenger RNA biogenesis [BR:
hmm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
R3I40_01655
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Cuticle_1
DUF459
YicC-like_C
Motif
Other DBs
NCBI-ProteinID:
WOO93326
LinkDB
All DBs
Position
338692..340386
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AA seq
564 aa
AA seq
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MSESPFHAKLGTPPKLKPGTLRVTPLGGLGEVGRNMTVFEIDGRLLIVDCGVLFPEESQP
GVDLILPDFTSIRDRLDDIVAIVLTHGHEDHIGAVPYLLRLKPDIPLVGSQLTLAFIEAK
LKEHRIKPLTMAVKEGEFQDLGPFECEFVAVNHSIPDALAVAIHTDAGTVLHTGDFKMDQ
LPLDGRLTDLRAFARLGEEGVDLFLVDSTNAEVPGFTVQEREIGPVLEGIFAKSEKKVVV
ASFSSHVHRVQQVFDAAAKHGRKVAFVGRSMVRNMTIAAEMGYLNIPKNTLIDVRKTDSM
PDDKVVFMCTGSQGEPMAALGRIANRNHRIEVGEGDTIILASSLIPGNETDVFRVVNGLL
ALGANVVHQANARVHVSGHASAGELLYCYNILQPKNVMPVHGEVRHLIANGDIAHSSGVP
RENIILTRDGGVVDLKDGVAKVVGEVECGYVYVDGSSVGEVSESDLKDRRILSEEGFISL
FAVVSSETGELVTGPEIHARGIAEDDDVFEKLKPQIKKALVRAIEEEKGHDTVQLQQAMR
RVVGRFASQRLRRRPMIIPVVVKA
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgaatcacccttccacgccaagctcggcaccccgccgaagctcaagcccggcacc
ctgcgggtcaccccgctgggcggcctcggcgaagtcggccgcaacatgaccgtcttcgag
atcgacggtcgcctcctcatcgtggactgcggcgtcctcttcccggaggagtcgcagccc
ggtgtggacctgatcctcccggacttcacctccatccgggaccgcctcgacgacatcgtc
gcgatcgtcctcacccacggccacgaggaccacatcggcgccgtgccgtacctgctgcgc
ctcaagccggacatccccctcgtgggaagccagctcaccctcgccttcatcgaggcgaag
ctgaaggagcaccgcatcaagccgctgaccatggcggtcaaggagggcgagttccaggac
ctcggcccgttcgaatgcgaattcgtcgccgtcaaccactccatccccgatgcgctcgcc
gtcgcgatccacaccgatgccggcaccgtgctgcacaccggtgacttcaagatggaccag
ctgccgctggacggccgcctcaccgacctgcgcgccttcgcccgcctcggcgaggagggc
gtggacctgttcctcgtggactccaccaacgctgaggttcctggcttcaccgtgcaggag
cgggagatcggccccgtgctcgagggcatcttcgcgaagtcggagaagaaggtcgtggtg
gcgtccttctccagccacgtgcaccgcgtgcagcaggtgttcgatgccgccgcgaagcac
ggccgcaaggtcgcgttcgtgggccgctccatggtccgcaacatgaccatcgccgcggag
atgggctacctgaacatccccaagaacaccctcatcgacgtccggaagaccgactccatg
ccggatgacaaggtcgtgttcatgtgcaccggctcccagggtgagccgatggcggcgctg
ggccgcatcgccaaccgcaaccaccgcatcgaggtgggggagggcgacaccatcatcctc
gcctcctccctcatccccggcaacgagaccgacgtgttccgggtggtcaacggcctgctc
gcgctcggcgcgaacgtggtgcaccaggcgaacgcgcgggtgcacgtgtccggtcacgcc
agcgccggtgagctgctttactgctacaacatcctccagccgaagaacgtgatgccggtg
cacggcgaggtccgccacctcatcgccaacggcgacatcgcgcactcctccggtgtgccg
cgcgagaacatcatcctcacccgcgacggcggcgtcgtggacctgaaggacggtgtggcg
aaggtcgtcggcgaagtcgaatgcggctacgtgtacgtggacggctcctccgtcggcgag
gtcagcgagtccgatctgaaggaccgccgcatcctctccgaagagggcttcatctccctg
ttcgccgtggtgtcctccgaaacgggggagctggtgaccggcccggagatccacgcccgc
ggcatcgcggaggacgacgacgtgttcgagaagctcaagccgcagatcaagaaggcgctg
gtgcgtgccatcgaggaggagaagggacacgacaccgtgcagctgcagcaggcgatgcgc
cgcgtggtgggccgcttcgcctcgcagcgtctgcgccgccgccccatgatcatcccggtg
gttgtgaaggcctga
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