KEGG   Helcobacillus massiliensis: R3I40_01655
Entry
R3I40_01655       CDS       T09498                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
hmm  Helcobacillus massiliensis
Pathway
hmm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hmm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    R3I40_01655
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hmm03019]
    R3I40_01655
Messenger RNA biogenesis [BR:hmm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     R3I40_01655
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B Lactamase_B_2 RMMBL Anti-Pycsar_Apyc1 Cuticle_1 DUF459 YicC-like_C
Other DBs
NCBI-ProteinID: WOO93326
LinkDB
Position
338692..340386
AA seq 564 aa
MSESPFHAKLGTPPKLKPGTLRVTPLGGLGEVGRNMTVFEIDGRLLIVDCGVLFPEESQP
GVDLILPDFTSIRDRLDDIVAIVLTHGHEDHIGAVPYLLRLKPDIPLVGSQLTLAFIEAK
LKEHRIKPLTMAVKEGEFQDLGPFECEFVAVNHSIPDALAVAIHTDAGTVLHTGDFKMDQ
LPLDGRLTDLRAFARLGEEGVDLFLVDSTNAEVPGFTVQEREIGPVLEGIFAKSEKKVVV
ASFSSHVHRVQQVFDAAAKHGRKVAFVGRSMVRNMTIAAEMGYLNIPKNTLIDVRKTDSM
PDDKVVFMCTGSQGEPMAALGRIANRNHRIEVGEGDTIILASSLIPGNETDVFRVVNGLL
ALGANVVHQANARVHVSGHASAGELLYCYNILQPKNVMPVHGEVRHLIANGDIAHSSGVP
RENIILTRDGGVVDLKDGVAKVVGEVECGYVYVDGSSVGEVSESDLKDRRILSEEGFISL
FAVVSSETGELVTGPEIHARGIAEDDDVFEKLKPQIKKALVRAIEEEKGHDTVQLQQAMR
RVVGRFASQRLRRRPMIIPVVVKA
NT seq 1695 nt   +upstreamnt  +downstreamnt
gtgagcgaatcacccttccacgccaagctcggcaccccgccgaagctcaagcccggcacc
ctgcgggtcaccccgctgggcggcctcggcgaagtcggccgcaacatgaccgtcttcgag
atcgacggtcgcctcctcatcgtggactgcggcgtcctcttcccggaggagtcgcagccc
ggtgtggacctgatcctcccggacttcacctccatccgggaccgcctcgacgacatcgtc
gcgatcgtcctcacccacggccacgaggaccacatcggcgccgtgccgtacctgctgcgc
ctcaagccggacatccccctcgtgggaagccagctcaccctcgccttcatcgaggcgaag
ctgaaggagcaccgcatcaagccgctgaccatggcggtcaaggagggcgagttccaggac
ctcggcccgttcgaatgcgaattcgtcgccgtcaaccactccatccccgatgcgctcgcc
gtcgcgatccacaccgatgccggcaccgtgctgcacaccggtgacttcaagatggaccag
ctgccgctggacggccgcctcaccgacctgcgcgccttcgcccgcctcggcgaggagggc
gtggacctgttcctcgtggactccaccaacgctgaggttcctggcttcaccgtgcaggag
cgggagatcggccccgtgctcgagggcatcttcgcgaagtcggagaagaaggtcgtggtg
gcgtccttctccagccacgtgcaccgcgtgcagcaggtgttcgatgccgccgcgaagcac
ggccgcaaggtcgcgttcgtgggccgctccatggtccgcaacatgaccatcgccgcggag
atgggctacctgaacatccccaagaacaccctcatcgacgtccggaagaccgactccatg
ccggatgacaaggtcgtgttcatgtgcaccggctcccagggtgagccgatggcggcgctg
ggccgcatcgccaaccgcaaccaccgcatcgaggtgggggagggcgacaccatcatcctc
gcctcctccctcatccccggcaacgagaccgacgtgttccgggtggtcaacggcctgctc
gcgctcggcgcgaacgtggtgcaccaggcgaacgcgcgggtgcacgtgtccggtcacgcc
agcgccggtgagctgctttactgctacaacatcctccagccgaagaacgtgatgccggtg
cacggcgaggtccgccacctcatcgccaacggcgacatcgcgcactcctccggtgtgccg
cgcgagaacatcatcctcacccgcgacggcggcgtcgtggacctgaaggacggtgtggcg
aaggtcgtcggcgaagtcgaatgcggctacgtgtacgtggacggctcctccgtcggcgag
gtcagcgagtccgatctgaaggaccgccgcatcctctccgaagagggcttcatctccctg
ttcgccgtggtgtcctccgaaacgggggagctggtgaccggcccggagatccacgcccgc
ggcatcgcggaggacgacgacgtgttcgagaagctcaagccgcagatcaagaaggcgctg
gtgcgtgccatcgaggaggagaagggacacgacaccgtgcagctgcagcaggcgatgcgc
cgcgtggtgggccgcttcgcctcgcagcgtctgcgccgccgccccatgatcatcccggtg
gttgtgaaggcctga

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