Helcobacillus massiliensis: R3I40_01880
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Entry
R3I40_01880 CDS
T09498
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hmm
Helcobacillus massiliensis
Pathway
hmm03030
DNA replication
hmm03430
Mismatch repair
hmm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hmm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R3I40_01880 (dnaE)
03430 Mismatch repair
R3I40_01880 (dnaE)
03440 Homologous recombination
R3I40_01880 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hmm03032
]
R3I40_01880 (dnaE)
03400 DNA repair and recombination proteins [BR:
hmm03400
]
R3I40_01880 (dnaE)
Enzymes [BR:
hmm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
R3I40_01880 (dnaE)
DNA replication proteins [BR:
hmm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
R3I40_01880 (dnaE)
DNA repair and recombination proteins [BR:
hmm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
R3I40_01880 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
DUF655
OB_MCM10
tRNA_anti_2
Rossmann-like
Motif
Other DBs
NCBI-ProteinID:
WOO93369
LinkDB
All DBs
Position
387898..391449
Genome browser
AA seq
1183 aa
AA seq
DB search
MASEDFVHLHCHTDYSLLDGAAKIDKLVAATAEQGQKAIAITDHGYVFGAYEFYRTAVAA
GVKPIVGVEAYVTPGTSRHDRTRQTWGTKAQQDAGDDVSARGAYTHMTLLSRTTEGMHNL
FRLASYASLDGQMGKWPRMDREILAKYASGLIATSGCPSGEVQTRLRLGQFDEAVRAAGE
FQDMFGKDFYFVELMDHGLDIERRVRTELLDVAKKIGAPLVATNDLHYVHKEDAAIQDAL
LCINSGSTFDTPGRFKFDGSGYYLKSAAEMRDIFRDLPEACDNTMRIAEMCDVSFTTTDE
GANFMPRFPVPEGEDEHSWFIKEVQRGLEYRYPAGIPDEVQERADYETSVITNMGFPGYF
LVVSDFIRWAKEQGIRVGPGRGSGAGSMVAYAMRITDLDPIPHGLLFERFLNPERVSMPD
FDVDFDDRRRGEVLDYVTKKYGDDRVAQVITYGVMKTKNSLKDGARVLGLPYAVGDRLTK
ALPPTVMGKDISIKGIFDPADKRYGEAEEYRRLHAEDPDTKRVTELAGGLEGLTRGWGVH
ACAVIMSSHTLTDIIPMMRRPADGQIITQFDYPTCETLGLLKMDFLGLRNLTVISDALEN
IEANGKQGPDFETLGFEDPETYRLLQRGDTLGVFQLDGAGMRSLLRQMKPDKFGDISAVS
ALYRPGPMGMNSHTNYALRKNGMQEITPIHPELAEPLQEILGETYGVIVYQEQVMQTAQK
VAGYSLGQADILRRAMGKKKKEELDKQMVGFRQGMLDHGYSEQAFQALWDVLLPFADYAF
NKSHSAAYGVVSYWTAYLKANFPTEYMAALLTSTQENRDRLGLYLGDCRHRGITVLPPDV
NESGMFFRAVGEDIRFGLSAVRNVGANVVEAIIQAREEKGAFTSFSDFLDKVPLVVCNKR
TIESLIKGGAFDSMGHNRRSLALIHEDAVDGVVDVKRKEQQGQYDLFGEGMFGEGEAFGS
AATMQVPDLPEWDRKQKLGFERVMLGLYVSDHPLHGLEHVLAQNSSHTISQLAEVENTEA
LGIVNLSGLVTGIQRKTTKKGDTWAIVTMEDLEGSIDCLLFPNTYQQVATELAEDIVVSM
KGRVDNSKGSAEMRVMEMTLLDTSSASADGPLVISIPDARMNERTAEQLREILEDNPGSS
EVRLKLMEPGRSTLMRLDRRLSVQASPALYASLKTLLGASCLG
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgaggatttcgttcacctgcactgtcacaccgactactccctcctggacggt
gcagcgaagatcgacaaactggtcgccgccaccgcggagcagggccagaaggccatcgcc
atcaccgaccacgggtacgtgttcggtgcctacgagttctaccgcaccgccgtcgctgcg
ggcgtgaagccgatcgtcggtgtggaagcgtacgtcacccccggtacgtcgcggcatgac
cgcacccgccagacctggggcacgaaggcgcagcaggacgccggcgacgacgtctccgcc
cgcggcgcctacacccacatgaccctgctgtcccgcaccaccgagggcatgcacaacctg
ttccgcctcgcctcctacgcctccctcgacggccagatgggcaagtggccccgcatggac
cgcgaaatcctcgcgaagtacgccagcggtctgatcgccacctccggctgcccctccggt
gaggtgcagacccgcctgcggctcggccagttcgatgaggcggtccgtgccgccggcgaa
ttccaggacatgttcggcaaggacttctacttcgtcgagctcatggaccacggcctggac
atcgagcgccgtgtgcgcaccgaactgctggacgtcgcgaagaagatcggggcgccgctg
gtcgccaccaacgacctccactacgtccacaaggaggacgccgcgatccaggacgccctg
ctgtgcatcaactccggctccaccttcgacacccccggccgcttcaagttcgacggctcc
ggctactacctgaagtccgcagccgagatgcgcgacatcttccgcgacctgcccgaagcg
tgcgacaacacgatgcgcatcgccgagatgtgcgacgtctccttcaccaccaccgatgag
ggcgcgaacttcatgccgcgcttccccgtgccggagggcgaggacgagcactcctggttc
atcaaggaagtgcagcgcggcctggagtaccgctacccggccggcatcccggacgaggtg
caggagcgcgccgactacgaaacgtccgtcatcaccaacatgggcttccccggctacttc
ctggtggtgtccgacttcatcagatgggcgaaggagcagggcatccgcgtgggccccggc
cgtggctccggtgccggctcgatggtcgcctacgccatgcgcatcacggacctggacccg
atcccgcacggcctgctgttcgagcggttcctcaacccggagcgcgtctccatgcccgac
ttcgacgtggacttcgatgaccgccgccgcggcgaagtgctcgactacgtcacgaagaag
tacggcgatgaccgcgtggcgcaggtgatcacctacggcgtgatgaagacgaagaactca
ctgaaggacggcgcccgcgtgctcggcctgccgtacgcggtgggggaccggctcacgaag
gcgctgccgcccaccgtgatgggcaaggacatctccatcaagggcatcttcgacccggcc
gacaagcgctacggggaggcggaggagtaccgccgcctgcacgcggaggacccggacacg
aagcgggtcacggagctcgccggcggactggagggcctgacccgcggctggggcgtgcac
gcctgcgcggtcatcatgtccagccacacgctcaccgacatcatcccgatgatgcggcgc
cccgcggacggccagatcatcacccagttcgactacccgacgtgcgagaccctcggcctg
ctgaagatggacttcctggggctgaggaacctgacggtgatctccgatgcgctggagaac
atcgaagcgaacggcaagcagggccccgatttcgagaccctcgggttcgaggacccggag
acgtaccggctgctgcagcgcggtgacaccctcggcgtgttccagctggatggcgcgggc
atgcggtccctgctgcggcagatgaagccggacaagttcggcgatatctcggctgtgtcg
gcgctgtaccgcccgggcccgatgggcatgaacagccacacgaactatgccctgcgcaag
aacgggatgcaggagatcaccccgatccacccggagctggcggagccgctgcaggagatc
ctcggcgagacctacggcgtcatcgtgtaccaggagcaggtgatgcagaccgcgcagaag
gtcgcgggctactccctgggacaggcggacatcctccgccgcgcgatgggcaagaagaag
aaggaagagctggacaagcagatggtgggcttccgccagggcatgctcgaccacggctat
tccgagcaggcgttccaggcgctgtgggatgttctgctcccgttcgcggactacgcgttc
aacaagtcgcactccgcggcctatggtgtggtgtcgtactggacggcgtacctgaaggcg
aacttccccacggagtacatggcggcgctgctgacctccacgcaggagaaccgcgaccgc
cttggcctctacctgggcgactgccgccaccgcggcatcacggtgctgccgccggatgtg
aacgagtccggtatgttcttccgcgctgtcggggaggacatccgcttcggactgtccgcg
gtccgcaatgtgggcgcgaacgtggtggaggcgatcatccaggcgagggaggagaagggc
gcgttcacctccttcagcgacttcctcgacaaggtgccgctggtggtgtgcaacaagcgc
accatcgagtcgctcatcaagggcggcgcgttcgattcgatgggccataaccgccgctcc
ctcgccctcatccacgaggacgcggtcgatggtgtggtcgatgtgaagcgcaaggagcag
cagggacagtacgacctgttcggcgaaggcatgttcggtgagggggaggcgttcggctcc
gccgccacgatgcaggtgccggacctgccggagtgggaccggaagcagaagctcggcttc
gagcgcgtgatgctgggcctgtacgtgtcggaccatccgctgcacggcctggagcacgtg
ctggcgcagaactcctcgcacacgatctcgcagctggcggaggtggagaacaccgaggcg
ctcgggatcgtgaacctgtcgggcctggtcaccggtattcagcgcaagaccacgaagaag
ggcgacacgtgggcgatcgtcacgatggaggacctggagggctccatcgactgcctgctg
ttcccgaacacgtaccagcaggtcgccacggagctcgcggaggacatcgtggtgtccatg
aagggccgcgtggacaactccaagggcagtgcggagatgcgcgtcatggagatgacgctg
ctggacacgtcgtcggcctcggcggatggtccgctggtgatctcgatcccggatgcccgc
atgaacgagcggacggcggagcagctgcgggagatcctggaggacaatccgggctccagc
gaggtgcggctgaagctgatggagccgggccgctccacgctcatgcgcctggatcggcgg
ctgagcgtgcaggcgtcacccgcgctgtacgcgtcgctgaagactctgctgggcgcgtcc
tgcctcggctga
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