Helcobacillus massiliensis: R3I40_03690
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Entry
R3I40_03690 CDS
T09498
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hmm
Helcobacillus massiliensis
Pathway
hmm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R3I40_03690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmm03019
]
R3I40_03690
03009 Ribosome biogenesis [BR:
hmm03009
]
R3I40_03690
Enzymes [BR:
hmm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
R3I40_03690
Messenger RNA biogenesis [BR:
hmm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
R3I40_03690
Ribosome biogenesis [BR:
hmm03009
]
Prokaryotic type
rRNA processing factors
R3I40_03690
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
P22_CoatProtein
Motif
Other DBs
NCBI-ProteinID:
WOO93702
LinkDB
All DBs
Position
791797..795009
Genome browser
AA seq
1070 aa
AA seq
DB search
MADAHPHTDEPSSTSVSSVPPRRRRRAAGSAAGAPQVSSPAPDQDSSPRTTAAAPAASSV
VTDAAPVNFRQRRRAAAASAPADSAAPADGPATRTRAASPAKAEKSSTSARTSAKDTKGA
STDAPKEAPKDAAEVLAAEPKRAGSRRAERAERAEEDRRTARSRRRSRRSSEADDSTPSA
DSDQNDLSSQSDQQEEPSPRRRSRRSESADGSERSSRRRSRRSSSDDRTEDAPAEAADAP
RDQNDRDQGSRNQGVADDLQALRESAPEPKRQRRAAADTADFANLLFQAPTPSDQDQDDE
PQFDANGVEISSALSFDAPDLEAARAEAERRREESRRRRAEQAQRSRDEADEDDDDVNDG
DSDDSDDDDSEGSRSSSRRRRRRGGRGRRGRGRGDDDQRSSGDDQSSDDDDSDDDDSSEE
EQPSSSRRRRRRRRSSGSSGEPESDDPPNTVVRVREARDEVRAVKGSTRLEAKRQRRREG
RESGRRRHSITEAEFLARRESVKRSMIVRERPGRTQIAVLEDNILVEHYVAQKSQTSMVG
NVYIGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNWDAAGLDGQPRRIELALKPGDPVLV
QVTKDPIGHKGARLTSQISLPGRYLVFVPGGSMTGISRKLPENERARLKKLLKTIVPKDA
GVIVRTAAEGATDEELTRDVERLQKQWEKIEKTRKSKNAPAALSTEPDLAIRVVRDIFNE
DFTSLIVEGESVYQEVHEYLSNVAPDLLDRVTKHVGDRDSFAKHRVDEQLMKAMDRKVYL
PSGGSLVIDRTEAMTVVDVNTGKFTGGAGGSLEETVTKNNLEAAEEIVRQLRLRDTGGII
VIDFIDMVLESNRDLVMRRLIECLSRDRTKHQVAEVTSLGLVQMTRKRVGAGLVETFSST
CDSCNGRGVIIDLDGHQHQEAPAFEDDSNRRGRRGRGKRGGRDSGGSANGNGGRGSKQSA
PTEADAEQALADADAKREAAAERARDAVQEIVDQKNSSDVQVLEQDQKSRDLARATIASI
AAATAKDDHHHPEVTVDGQVISLDQEGEPEQAPSAQDDPQSALDLTAEED
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgcacacccgcacactgatgaaccctcgtcgaccagcgtctcgagcgttccg
ccccgacgccgtcgccgagcagccggcagcgcagccggcgcgcctcaggtgagcagcccc
gcccctgaccaggactcgagcccccgcaccactgccgccgctcccgccgcctccagcgtc
gtgaccgatgcggcacccgtgaacttccgccagcgccgccgcgccgctgccgcctccgcg
ccagcggactcggccgccccggccgacggccccgccacgcgcacccgcgccgcctccccg
gcgaaggcggagaagagcagcaccagcgcccgcacgtcggcgaaggatacgaagggtgca
tcgacggatgcgccgaaggaagctccgaaggacgccgctgaggtgctcgccgctgagccg
aagcgcgccggttctcgccgcgcagagcgtgcggagcgcgccgaggaggaccgccgcacc
gcgcgcagccgtcgccgttcccgccgcagcagcgaggctgatgattcgaccccgtcggcc
gattccgatcagaacgacctcagcagccagagcgaccagcaggaggagccgagccctcgc
cgccgcagccgccgctcggagagcgctgatggctctgagcgcagctcgcgtcgccgctcg
cgccgatcctccagcgacgaccgcaccgaggacgcgcccgctgaggccgcagacgccccg
cgcgaccagaacgaccgcgatcagggctcgcgcaatcagggtgtggccgatgacctgcag
gccctgcgcgagtccgctccggagccgaagcgtcagcgccgcgccgccgccgacaccgcc
gacttcgcgaacctcctcttccaggcaccgacgccgagcgaccaggaccaggacgatgag
ccgcagttcgatgcgaacggcgtggagatcagctccgctctgagcttcgacgcccccgac
ctcgaggccgcccgcgcagaggcggagcgtcgtcgcgaagagtcgcgtcgtcgccgcgcc
gagcaggcgcagcgcagccgtgacgaggccgatgaggacgatgacgacgtcaacgacggt
gactccgacgactccgatgacgacgattcggagggctcgcgctcctcgtcccgccgccgt
cgccgccgcggtggccgtggtcggcgcggccggggccgcggtgacgatgatcagcgcagc
tccggagacgaccagtcctcggatgacgacgacagcgacgatgacgactcctcggaggag
gagcagccctcgagcagccgtcgccgtcgtcgccgtcgccgctcctcgggttccagcggt
gagccggagtcggacgatccgccgaacacggtggtgcgcgtgcgcgaagcccgcgacgag
gttcgagccgtcaagggctcgacccgcctggaggcgaagcgccagcgccgccgcgagggc
cgtgagtccggccgtcgccgccactccatcaccgaggcggagttcctggcccgccgcgag
tccgtcaagcgctccatgatcgtgcgcgagcgcccgggccgcacccagatcgccgtgctc
gaggacaacatcctcgtggagcactacgtggcgcagaagtcgcagacctcgatggtcggc
aacgtgtacatcggcaaggtgcagaacgtgctgccgtcgatggaggccgccttcatcgac
atcggcaagggccgcaacgccgtgctgtacgccggtgaggtcaactgggacgccgctgga
ctcgacggtcagccgcgccgcatcgaactggccctcaagccgggcgaccctgtgctggtg
caggtcaccaaggacccgatcggccacaagggcgcccgcctgacctcgcagatctccctg
ccgggccgctacctggtgttcgtgccgggcggttccatgaccggcatctcccgcaagcta
ccggagaacgagcgcgcccgcctgaagaagctgctgaagaccatcgtgccgaaggacgcg
ggcgtgatcgtccgcactgccgctgagggcgcaacggatgaggagctgacgcgggacgtc
gagcgtctgcagaagcagtgggagaagatcgagaagacccgcaagtcgaagaacgccccg
gctgcgctgtccaccgaaccggacctggcgatccgcgtggtccgcgacatcttcaacgaa
gacttcacctcgctgatcgtcgagggtgagagcgtgtaccaggaggtgcacgagtacctc
tccaacgtggcgccggacctgctggaccgcgtcaccaagcacgtcggtgaccgcgactcg
ttcgccaagcaccgcgtggacgagcagctgatgaaggcgatggaccgcaaggtctacctg
ccctccggtggttcgctcgtcatcgaccgcaccgaggccatgaccgtggtggacgtcaac
accggcaagttcaccggcggtgccggcggctcgctggaggagaccgtcaccaagaacaac
ctggaggcggcggaggagatcgtccgtcagctgcgtctgcgcgacaccggcggcatcatc
gtcatcgacttcatcgacatggtgctcgaatccaaccgcgacctcgtcatgcgccgcctc
atcgaatgcctctcccgtgaccgcaccaagcaccaggtggcggaggtgacctccctcggc
ctcgtgcagatgacccgtaagcgggtgggcgccggcctcgtggagaccttctcctcgact
tgtgacagctgcaacggccgcggcgtgatcatcgacctcgacggtcaccagcaccaggag
gctcccgcgttcgaggacgactccaaccgtcgtgggcgccgcgggcgcggcaagcgcggt
ggtcgtgactccggcggcagtgcgaacggcaacggtggtcgcggctccaagcagagcgcg
ccgacggaggccgacgctgagcaggcccttgccgatgcggacgccaagcgcgaagccgca
gctgagcgcgctcgtgacgccgtgcaggagatcgtggaccagaagaacagcagcgacgtc
caggtcctggagcaggaccagaagtcgcgcgacctcgcccgcgccacgatcgcctcgatc
gcggccgcgaccgcgaaggacgatcaccatcacccggaggtgacggtggacggccaggtc
atcagcctcgaccaggagggtgagccggagcaggccccgtcggctcaggatgacccgcag
agtgcactggacctcacggccgaggaggactga
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