Helcobacillus massiliensis: R3I40_04155
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Entry
R3I40_04155 CDS
T09498
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hmm
Helcobacillus massiliensis
Pathway
hmm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R3I40_04155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmm03019
]
R3I40_04155
03009 Ribosome biogenesis [BR:
hmm03009
]
R3I40_04155
Enzymes [BR:
hmm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R3I40_04155
Messenger RNA biogenesis [BR:
hmm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R3I40_04155
Ribosome biogenesis [BR:
hmm03009
]
Prokaryotic type
rRNA helicases
R3I40_04155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
WOO94116
LinkDB
All DBs
Position
complement(892894..894696)
Genome browser
AA seq
600 aa
AA seq
DB search
MNENIDTTDPTATTEDAAVTFADLGLPPALLDAVTEIGFVTPSPIQEKAIPALLNGEDVI
GVAQTGTGKTAAFGLPMLAHTDPSSTATQGLVLAPTRELAMQVGDAIQDFARNMPGVRVL
SIYGGSPYGPQEKALERGVQIVVGTPGRVIDHLKRGNLRLGDLQTLVLDEADEMLRMGFA
EDVDEILGFVPEEKRMALFSATMPPAIKRVADEHMPSAVSVAVARQSTTVTSVEQSYAVV
PFKHKTGALTRVIETSDADAAIVFVRTRSAAEEVGTALVGRGIVAATISGDVAQKERERI
VGRLREGSLDVLVATDVAARGLDVERIGLVVNFDVPGEPEAYVHRIGRTGRAGRTGKAIT
FVAPHERRKLKNIERVTRQELTEVQVPTPLDVSRHKMQRVLGEVQTRLDAGRLSLYHELI
SEHLESTNISAEQLAAVLGAMVVGDDGPRRDDEEFTGASFRDQGRDRDRANRGDRGSRDG
GPRDRSRGPRTTSPGFTSYRISVGRNHGVRPQAVVGAIAGEGGLNGKDVGKIDIFPSFSL
VELRNGVSEDQLAAIGRARVAGKQMRIAEDRGPGGGKGGHRGFRGGRDRDFGGRGRDRRF
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagaacatcgacaccaccgaccccaccgccaccaccgaggatgcggccgtgacc
ttcgccgacctcggccttccgccggcccttctggacgccgtcaccgagatcggattcgtc
accccctcccccattcaggagaaggccattccggcgctgctgaacggcgaggacgtcatc
ggcgtggcccaaaccggcaccggcaagaccgccgcgttcggtctgccgatgctggcgcac
accgacccctcgtccaccgcgacgcagggtctggtcctggcaccgacccgcgagctcgcc
atgcaggtgggcgatgcgatccaggacttcgcccgcaacatgccgggcgtgcgcgtgctg
tccatctacggcggctccccctacggcccgcaggagaaggcgctggagcgcggtgtgcag
atcgtggtcggcacgcccggccgcgtcatcgaccacctcaagcgcggcaaccttcgcctg
ggcgacctgcagaccctcgtgctcgatgaggccgacgagatgctccgcatgggcttcgcc
gaggacgtcgacgagatcctcggattcgtcccggaggagaagcgcatggcgctgttctcc
gccaccatgccgccagcgatcaagcgtgtggccgacgagcacatgcccagcgccgtcagc
gtcgccgtggcgcgccagtccaccactgtcaccagcgtggagcagagctacgcggtggtg
ccgttcaagcacaagaccggtgcgctcacccgggtcatcgagaccagcgatgcagacgct
gcgatcgtgttcgtccgcacccgcagcgctgctgaagaggtcggcaccgccctggtggga
cgcggcatcgtcgccgccaccatctccggtgacgtcgcgcagaaggagcgcgagcgcatc
gtcggccgcctgcgcgagggctccctcgacgtcctggtcgccaccgatgtcgccgctcgc
ggcctcgacgtggagcgcatcggcctggtcgtcaacttcgacgtccccggtgagccggag
gcgtacgtgcaccgcatcggccgcaccggccgcgccggccgcaccggcaaggccatcacc
ttcgtggcgccgcacgagcgccgcaagctgaagaacatcgagcgcgtgacgcgccaggag
ctcaccgaggtccaggttccgaccccgctggacgtgtctcgccacaagatgcagcgcgtc
ctcggcgaggtgcagacccgcctggacgccggccgactcagcctctaccacgagctgatc
tccgaacacctggagagcaccaacatctctgccgagcagctcgccgctgtcctcggcgcc
atggtggtgggcgatgacggcccccgccgcgacgatgaggagttcaccggtgcgtcgttc
cgcgaccagggccgcgaccgtgatcgcgcgaatcgcggcgatcggggcagccgtgacggc
ggtccgcgcgaccgcagccgcggcccgcgcaccacgagccccggcttcacctcctaccgg
atcagcgtgggccgcaaccacggtgtgcgcccgcaggccgtggtcggggccatcgccggc
gagggcggcctgaacggcaaggacgtgggcaagatcgacatcttcccgtcgttctccctg
gtcgaactgcgcaacggcgtgagcgaggaccagctcgcggcgatcggtcgcgcccgtgtg
gccggcaagcagatgcgcatcgctgaggaccgcggccccggcggcggcaagggcggacac
cgcggcttccgcggtgggcgcgaccgcgacttcggcggacgcggccgcgaccgccgcttc
tga
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