Helcobacillus massiliensis: R3I40_04300
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Entry
R3I40_04300 CDS
T09498
Name
(GenBank) DNA topoisomerase IV subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
hmm
Helcobacillus massiliensis
Brite
KEGG Orthology (KO) [BR:
hmm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hmm03032
]
R3I40_04300
03400 DNA repair and recombination proteins [BR:
hmm03400
]
R3I40_04300
Enzymes [BR:
hmm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
R3I40_04300
DNA replication proteins [BR:
hmm03032
]
Prokaryotic type
DNA Topoisomerases
R3I40_04300
DNA repair and recombination proteins [BR:
hmm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
R3I40_04300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
Motif
Other DBs
NCBI-ProteinID:
WOO93808
LinkDB
All DBs
Position
925908..928046
Genome browser
AA seq
712 aa
AA seq
DB search
MAATKNTSASRSRASSYDARNLQVLEGLEAVRKRPGMYIGSTDSRGLTHCLWEILDNSVD
EALGGHGDTIRVILHADGSIEVRDTARGVPIDKEPRTGLTGVEVVYTKLHAGGKFGGGSY
AASGGLHGVGASVVNALSSRMEVQVDRGGRTYAMSFSRGVPGTFADGHPSDPDPAAEFTP
AKGPGVLDEIGTVKRGVTGTRVRYWADPQIFIKGAHVTLDEIQRRARQTAFLVPGLTLTV
ADQRPERAPEQPESTTYQYDGGISEFVDYLAQDEKITDIIRLSGSGEYTETVPVLDSKGQ
MVSKDVKRECAVDIALRWGTDFDTTVRSFVNIVSTPKGGTHIQGFELALTRTIRSAVEAQ
ARRVKFNAKKEKIEKDDVLAGITAVVTVRLEEPQFEGQTKEILGTPAVRQIVAKVVDQEL
GAFLTSTKREEKQQAALVVDKVVSEMRARVAARMHKEVSRRKNALESSTMPTKLADCRST
DIERSELFIVEGDSALGTAKNARDSEFQALLPIRGKILNVQKASITDMLKNAECAAIIQV
IGAGSGRTFDLETARYGKIIMMSDADVDGAHIRTLLLTLFHRYMRPMLEAGRIYAAVPPL
HRVEIIHGGKKKNELVYTYSEAELTTLLKKLERSKKRYKEPIQRYKGLGEMDADQLADTT
MDPSQRLLRRVTISDAEAADRVFELLMGSEVAPRKQFIVEGADDLSMERIDA
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atggccgccacgaagaacacgtccgcatcccgctcccgcgcctcctcctatgacgcgcgg
aacctgcaggtcctcgaaggactcgaggcagtccggaagcgacccggcatgtacatcggg
tccacggactcccgcggcctcacccactgcctgtgggagatcctcgacaactccgtggac
gaagcgctcggcggtcacggcgacaccatccgcgtgatcctgcacgccgacggctccatc
gaagtgcgcgacaccgcccgcggcgtccccatcgacaaggagccccgcaccggcctcacc
ggcgtcgaagtggtctacaccaagctccacgccggcggaaagttcggcggcggctcctac
gcagcctccggcggtctgcacggcgtcggcgcctcggtcgtcaacgccctctcctcccgc
atggaggtccaggtggaccgcggcggaaggacctacgccatgagcttctcccgcggcgtc
cccggcaccttcgccgatgggcacccgtcggaccccgacccggccgccgagttcaccccc
gcgaagggccccggtgtcctcgatgagatcgggacggtgaagcgcggcgtcaccggcacc
cgcgtccgctactgggcggacccgcagatcttcatcaagggcgcccacgtgacgctggac
gagatccagcgccgcgcccgccagaccgcattcctcgtgcccggcctcaccctcaccgtg
gccgaccagcggcccgagcgcgcccccgaacagcccgaatccaccacctaccagtacgac
ggcgggatcagcgagttcgtcgactacctcgcgcaggacgagaagatcaccgacatcatc
cgcctgtccggctccggtgagtacaccgagaccgtccccgtcctcgactccaagggccag
atggtgtccaaggacgtcaagcgcgaatgcgcggtcgacatcgccctgcggtggggaacc
gacttcgacaccactgtccgctccttcgtcaacatcgtctccacccccaagggcggcacc
cacatccagggcttcgaactcgccctcacccgcaccatccgctccgcggtcgaggcgcag
gcacgccgggtgaagttcaacgcgaagaaggagaagatcgagaaggacgacgtcctcgcc
ggcatcaccgccgtggtcaccgtccgtctcgaagagccccagttcgaaggccagaccaag
gagatcctcggcacccccgctgtgcggcagatcgtcgcgaaggtcgtggaccaggagctc
ggcgccttcctcaccagcaccaagcgggaggagaagcagcaggccgccctcgtggtggac
aaagtggtctccgagatgcgcgcccgcgtggcggctcgcatgcacaaggaggtctcgcgc
cgcaagaacgctctggagtcctccacgatgccgaccaagctcgccgactgccgctccacc
gacatcgaacgctccgaactgttcatcgtggagggcgactccgcgctcggcaccgcgaag
aacgcccgcgactccgagttccaggccctgctgccgatccgcggcaagatcctcaacgtg
cagaaggcatccatcacggacatgctgaagaacgccgaatgcgccgccatcatccaggtg
atcggcgccggctccggccgcaccttcgatctggagaccgcccgctacggcaagatcatc
atgatgagcgacgccgacgtcgacggcgcccacatccgaaccctcctgctcaccctgttc
caccgctacatgcggcccatgctggaagccggccgcatctacgccgcggtgccgccgctg
caccgggtggagatcatccacggcggaaagaagaagaacgaactggtctacacctattcc
gaagcggagctcacgaccctgctgaagaagctggaacgctccaagaagcggtacaaggag
ccgatccagcggtacaagggcctcggtgagatggacgccgaccagctcgcggacaccacc
atggatccctcccagcgtctgctgcgccgcgtcaccatctccgatgccgaagccgccgac
cgcgtgttcgaactgctgatgggctccgaagtggcgccccgcaagcagttcatcgtggag
ggcgccgacgacctctcgatggagaggatcgacgcatga
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