Helcobacillus massiliensis: R3I40_05580
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Entry
R3I40_05580 CDS
T09498
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
hmm
Helcobacillus massiliensis
Pathway
hmm03030
DNA replication
hmm03430
Mismatch repair
hmm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hmm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R3I40_05580 (holA)
03430 Mismatch repair
R3I40_05580 (holA)
03440 Homologous recombination
R3I40_05580 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hmm03032
]
R3I40_05580 (holA)
03400 DNA repair and recombination proteins [BR:
hmm03400
]
R3I40_05580 (holA)
Enzymes [BR:
hmm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
R3I40_05580 (holA)
DNA replication proteins [BR:
hmm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
R3I40_05580 (holA)
DNA repair and recombination proteins [BR:
hmm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
R3I40_05580 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delta_C
DNA_pol3_gamma3
DUF4381
Motif
Other DBs
NCBI-ProteinID:
WOO94049
LinkDB
All DBs
Position
complement(1199385..1200371)
Genome browser
AA seq
328 aa
AA seq
DB search
MAQVEWHSVAPAPVVLLTGREPLLLQRAADRLRTLVREKDPEVEIHNLQAGDTTPGELRQ
VTAPSLFGDARFVLIDNLGRANDQLLDALIDYVQQPEDGVTLVLRHGGEQRGKKLLDTIR
KSGAPWVKADPIKKLNDKHAFTLSEFSRARRRIATDAVHALVDAFGSDLAELAATCQQLL
SDTQPEPGEEAGPITLRDVEALTAGRVETTAFAVADAAIGGKEREALALLRHAELAGVDP
VPLVASFARKLRDVARAAAPGATAQSVGMPDWLFRNQAREARQWTDRGLAAAIQAVASAD
HGVKGNERDPHWTVQRMVISICRARRIR
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atggcccaggtggaatggcacagcgtcgcacccgccccggtggtgctgctgacaggcaga
gaaccgctgctgctgcagcgggccgctgaccgcctccgcacactcgtccgggagaaggac
cccgaggtcgaaatccacaacctgcaggccggcgacaccacgcccggtgaactgcggcag
gtcaccgcaccgtccctgttcggcgacgcccgcttcgtcctcatcgacaacctcggccgc
gccaacgaccagctgctcgacgcgctcatcgactacgtgcagcagcccgaggacggcgtc
accctcgtgctgcgccacggcggggagcagcgcggcaagaagctcctggacaccatcagg
aagtccggtgctccctgggtgaaggccgacccgatcaagaagctgaacgacaagcacgcg
ttcacactctccgagttctcccgtgcccgccggcgcatcgccaccgacgccgtccacgcc
ctcgtcgacgccttcggctccgacctcgcagagctcgccgccacctgtcagcagctgctg
tccgatacgcagccggaaccgggggaggaggcaggcccgatcaccctgcgcgacgtcgag
gcgctcaccgccgggcgggtggagaccaccgcgttcgccgtggccgatgccgcgatcggc
ggcaaggagcgcgaagccctcgccctgctgcgccacgcggagctcgccggtgtggatccc
gtgccgctcgtcgcgagcttcgcccgcaaactgcgggatgtggccagggcggcggcgccg
ggtgccactgcgcagtccgtcggcatgcccgattggctgttccgcaatcaggcccgggag
gcccgccaatggaccgaccgcggactcgccgccgcgatccaggccgtcgcctccgccgac
cacggtgtgaagggcaacgaacgcgacccccactggaccgtgcagcgcatggtcatcagc
atctgccgcgcccgccgcatccgctga
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