Helcobacillus massiliensis: R3I40_07615
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Entry
R3I40_07615 CDS
T09498
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hmm
Helcobacillus massiliensis
Pathway
hmm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hmm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
R3I40_07615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hmm03021
]
R3I40_07615
03400 DNA repair and recombination proteins [BR:
hmm03400
]
R3I40_07615
Enzymes [BR:
hmm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
R3I40_07615
Transcription machinery [BR:
hmm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
R3I40_07615
DNA repair and recombination proteins [BR:
hmm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
R3I40_07615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
GemA
Motif
Other DBs
NCBI-ProteinID:
WOO92280
LinkDB
All DBs
Position
complement(1634516..1638403)
Genome browser
AA seq
1295 aa
AA seq
DB search
MLDVNHFDELRIGLATADEIRSWSHGEVKKPETINYRTLKPEMDGLFCERIFGPTRDWEC
YCGKYKRVRFKGIVCERCGVEVTKSAVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITEVDEDARHEDMPELQQRHDLEIKELASERDAAINDRALAAEKD
LAQLEEEGAKADAKRKVRDSSEREQAQIRKKYDTEIARIEAIWDRFKNLKVADLEGDEQL
YRAMKLRYGTYFEGGMGAGALQKRLQDFDLEAEAATLRDTIANGKGQRKARALKRLKVVS
SFLSTSNQPAGMVLEAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLMDL
GAPEIIVNNEKRMLQESVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRANLLGK
RVDYSGRSVIVNGPELNLHQCGLPKGMALELFKPFVMKRLVDLGHAQNVKAAKRMVERAR
PEVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPVLVEGKAIHLHPLVCAAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPSDGRPVTMPAQDMIIGLYHLTTVNEDALGAGR
TFGSVAEAIMAFDAGELHINAPITIRFEDIVAPTDWEAPEGWSEGDPIRLTTTLGTVYFN
ETLPLDFPFVQGQVGKKRLGTIVNALAERYEKVQVSASLDALKSYGFHWSTFSGVSFGLA
DVVAPPNKAEIIAKYEAKAAQVDENRDLGLVSEAERNSELIDIWTEATNEVDAAMRANFE
RDNSIYRMVDSGARGNWMQIRQIAGMRGLVNNPKGEIIPRPILSNYREGLSVLEYFIASH
GSRKGLADTALKTAQSGYLTRRLVDVSQDVIVREHDCGSTKGFTMPIGVEEGGVVVPAEN
VEITAYGRSLAQPVLAEDGTELAAAGADVGDVLIEKLVAAGVTEVKVRSVLTCDSAVGTC
AMCYGRSLATGQIVDIGEAVGIIAAQSIGEPGTQLTMRTFHSGGVASSGGDITHGLPRVQ
ELFEARTPAGFAPITEVAGRVSIEETDKQRKLTVTPDDGSEPVSYTLSKRVSMLVFDGDH
IEAGQQLSQGSVDPKQVLRILGPRAVQKHLVDEVQKVYVSQGVDIHAKHIEVIVRQMLRR
NTIVSSGDTNLLPGDLVESAAFVAENRRVVAEGGEPAAGRPELMGITKASLATESWLSAA
SFQETTRVLTEAALNQKSDQLMGLKENVIIGKLIPAGTGLPRFRSFDVEPTEEAKASMYQ
VPGLDDFGFGDYNGSGSSLNLDDLDFGDPFRTNTI
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaaccactttgacgagctgcgaatcggcctcgcaacggccgatgagatc
cgttcgtggtcccatggcgaagtcaagaagccagagaccatcaactaccgaaccctcaag
cccgagatggacggcctcttctgcgagcgcatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaaggggatcgtctgcgaacgctgcggcgtc
gaggtgacgaagtcggccgtgcgccgtgagcgcatgggccacatcgaactcgccgccccg
gtcacccacatctggtacttcaagggcgtcccgagccgcctcggctacctgctggacctc
gccccgaaggacctcgagaaggtcatctacttcgcggcgtacatgatcaccgaggtggac
gaggacgctcgccacgaggacatgccggagctgcagcagcgccatgacctcgagatcaag
gagctcgcctccgagcgcgacgccgcgatcaacgaccgcgccctcgccgccgagaaggac
ctcgcccagctcgaggaggagggtgccaaggccgacgccaagcgcaaggtccgcgactcc
tccgagcgcgagcaggcgcagatccgcaagaagtacgacaccgagatcgcccgcatcgag
gcgatctgggaccgcttcaagaacctcaaggtcgccgacctcgagggcgatgagcagctg
taccgcgccatgaagctgcgctacggcacgtacttcgagggcggcatgggcgccggtgcg
ctccagaagcgtctgcaggacttcgacctcgaggccgaagccgcgacgctgcgcgacacc
atcgccaacggcaagggccaacgcaaggcgcgcgccctgaagcgcctgaaggtcgtctcc
tccttcctgtcgacctccaaccagcccgcaggcatggtcctcgaggcgatcccggtgatc
ccgccggacctgcgcccgatggtgcagctggacggcggccgcttcgcgacctccgacctc
aacgacctgtaccgtcgcgtcatcaaccgcaacaaccgcctcaagcgcctgatggacctt
ggtgcgcccgagatcatcgtgaacaacgagaagcggatgctgcaggagtccgtggactcc
ctgttcgacaacggacgccgcggccgcccggtcaccggtccgggcaaccgtccgctgaag
tcgctgtccgacatgctcaagggcaagcagggccgcttccgtgcgaacctgctgggcaag
cgcgtggactactccggtcgttccgtcattgtgaacggtccggagctgaacctgcaccag
tgcggcctgccgaagggcatggcgctggagctgttcaagccgttcgtgatgaagcgcctg
gtcgacctcggccacgctcagaacgtcaaggccgccaagcgcatggtggagcgcgcacgc
cccgaggtgtgggatgtcctcgaagaggtcatcaccgagcacccggtgctgctgaaccgt
gcacccaccctgcaccgcctcggcatccaggcgttcgagccggtgctcgtggagggcaag
gccatccacctgcacccgctggtctgtgcagcgttcaacgctgacttcgacggtgaccag
atggctgtgcacctgccgctctccgcggaggcgcaggccgaggcccgcatcctcatgctg
tcctcgaacaacatcctcaagccgtcggacggccgcccggtcaccatgccggcgcaggac
atgatcatcggtctgtaccacctgaccacggtcaacgaggacgcgctcggcgccggtcgc
accttcggctccgtcgccgaagcgatcatggcgttcgacgccggtgagctgcacatcaac
gccccgatcaccatccgcttcgaggacatcgtcgcgccgaccgattgggaggcgccggag
ggctggagcgagggcgacccgatccgcctgaccaccaccctcggcaccgtgtacttcaac
gagaccctgcctctggacttcccgttcgtgcagggccaggtgggcaagaagcgcctcggc
acgatcgtcaacgccctggccgagcgctacgagaaggtgcaggtctccgcatcgctggat
gcgctgaagtcctacggcttccactggtcgaccttctccggtgtgtcgttcggtctggcc
gacgtggtcgccccgccgaacaaggcggagatcatcgccaagtacgaggcgaaggccgcc
caggtcgatgagaaccgcgacctcggcctcgtgtccgaggcggagcgcaactccgaactg
atcgacatctggaccgaagccaccaacgaggtggacgccgcgatgcgcgccaacttcgag
cgcgacaactcgatctaccgcatggtggactcgggcgcacgaggcaactggatgcagatc
cgtcagatcgccggtatgcgcggcctggtgaacaacccgaagggcgagatcatcccgcgt
ccgatcctctcgaactaccgagagggcctgtcggtgctggagtacttcatcgcctcgcac
ggctcccgtaagggcctggcggatacggctctgaagaccgcccagtccggctacctgacc
cgtcgtctggtcgacgtctcgcaggacgtcatcgtccgcgagcacgactgcggctccacc
aagggcttcaccatgccgatcggtgtggaggagggcggcgtcgtcgtcccggccgagaac
gtggagatcaccgcctacggccgctccctcgcgcagccggtcctcgcggaggacggcacc
gagctcgccgcagccggcgccgatgtgggcgacgtcctcatcgagaagctggtcgccgcc
ggtgtcaccgaggtcaaggtccgctccgtgctcacctgtgactccgctgtcggcacctgc
gccatgtgctacggccgctccctggccaccggccagatcgtcgacatcggcgaggccgtc
ggcatcatcgccgcacagtcgatcggtgagcccggcacgcagctgaccatgcggaccttc
cactccggtggtgtcgcgtcctccggcggcgacatcacgcacggtcttccccgtgtgcag
gagctgttcgaggcacgcaccccggccggcttcgcgccgatcaccgaggtcgccggccgc
gtcagcatcgaggagacggacaagcagcgcaagctcactgtcaccccggacgacggttcc
gagcccgtcagctacaccctgtccaagcgcgtgtcgatgctcgtcttcgacggcgaccac
atcgaggccggccagcagctctcccagggctcggtcgacccgaagcaggtgctgcgcatc
ctcggtccccgcgccgtgcagaagcacctcgtggacgaggttcagaaggtgtacgtgtcg
cagggtgtggacatccacgccaagcacatcgaggtcatcgtgcgccagatgctgcgtcgc
aacacgatcgtctcctccggtgacacgaacctgctgccgggcgacctcgtggaatccgct
gcgttcgtcgccgagaaccgtcgcgtggtggctgagggcggcgagcccgcagccggacgt
ccggagctcatgggcatcaccaaggcgtcgctggcgaccgagtcatggctgtccgcggca
tcgttccaggagacgacccgcgtgctcaccgaggctgctctcaaccagaagagcgaccag
ctgatgggcctcaaggagaacgtcatcatcggtaagctcatcccggccggcaccggcctg
ccgcggttccgcagcttcgatgttgagccgaccgaggaggcgaaggcctcgatgtaccag
gtccccggcctggacgacttcggcttcggcgactacaacggctccggctcctcgctgaac
ctggacgacctcgacttcggtgatccgttccgcacgaacacgatctga
DBGET
integrated database retrieval system
