Halobacillus mangrovi: HM131_00795
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Entry
HM131_00795 CDS
T04799
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hmn
Halobacillus mangrovi
Pathway
hmn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hmn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HM131_00795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hmn03400
]
HM131_00795
Enzymes [BR:
hmn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HM131_00795
DNA repair and recombination proteins [BR:
hmn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HM131_00795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
DUF3638
SecA_DEAD
AAA_22
UB2H
Motif
Other DBs
NCBI-ProteinID:
ARI75453
UniProt:
A0A1W5ZQ96
LinkDB
All DBs
Position
complement(128045..131581)
Genome browser
AA seq
1178 aa
AA seq
DB search
MQGIKDYLYPQDDIQSVVEGFESGMKEQMVAGLSGASRSLMISVVKESLNRPVLLVTHQL
VQAQQLYEDFQELTDSNQVHLYPVNELIASEIAIASPELRSQRIDSLSQWLNQDTGILIA
PVAALKRIMPPKSYWEHNQLPFRVGEDIDLDEYLERFVRMGYERTEMVATPGEFSLRGGI
MDIYPLTAEYPYRIELFDTEVDSIRTFDSETQRSHEKLKEVFIGPATELLLRDEDFVRAY
HRLEEALSHSLQKLTKSEAKETLNQFIEEDLDRLKQQERFQEIYKYIGYFYDRPVSLLDY
LPKNGLLILDEMSRIQETANRLDQEEAEWHQSLLEANQMVRDLKISYDWHDTWAKMEHPR
LYMSVFMRHIPNTHPQNIVNISSRQMQQFHGQMNLLKSEMDRWQKQDYSVIILAPDENRQ
EKIQSVLEDYDMEAVIAKDEVKLPLTKPTIMIGNISSGFEWPMHHLAVLTENELFKKRTA
KPKRKQKMSNAERIKNYQELKVGDYIVHANHGIGKYLGIETLEMNGNHKDFLMVKYSGND
KLYVPIDQIDLIQKYVGSEGKEPKVYKLGGSEWNKVKRRVQSSVEDIADDLIQLYAEREA
SKGYAFSKDDEMQREFETAFPYEETEDQIRCIEEIKEDMERIRPMDRLLCGDVGYGKTEV
AIRAAFKAIVDGKQVAILVPTTILAQQHYETLQERFQGFGINIGLMSRFRTRKQQKETTD
RIRKGLDDIVVGTHRILSKDVQFKDLGLLIVDEEQRFGVKHKEKIKQLKHNVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPANRFPIQTYVLEYNPIFLREAVEREMARDGQVFFLFN
RVENIERMAQEIAELVPEARVTFAHGQMNETELENVMFSFLEGEFDVLVSTTIIETGVDI
PNVNTLIVYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYQKDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGSQQHGFIDSVGFDMYSQMLKDAIEAKRQGKEPEAVQP
FQPELDMSMDAYIPEEYIREEKQKIDMYKQFQAIESVEDIHDLRDELIDRFGDYPEEVEN
LFRVSSIRLYAKQARIESISEKKKKLEMVMESEQSQQIDGAKLFEFANKYGRIVQLGTED
NQLKVTFNWDRKSQLKRYEIVEEFISKLPEMARETTTA
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggaattaaggattatctatatccgcaggatgatatccagtcagttgttgagggt
tttgaatcagggatgaaagagcagatggtagcgggtttatcgggagcttcccgaagttta
atgatatctgtagtcaaggaatcgttaaaccgtcctgtattgctggttacccatcaactg
gtccaagcccagcaactgtatgaggactttcaagagctgactgattcaaatcaagttcat
ctataccctgtaaatgaactgatcgcttctgagattgcgattgcaagcccagagcttcga
agtcagcgtatcgattctctcagccaatggctaaatcaagataccggcatacttattgcc
cctgtggctgcattaaaacggattatgccaccgaaatcctattgggagcacaatcagctc
ccttttcgtgttggggaagatattgatttagatgaatatctcgagcgttttgtcaggatg
ggatatgaacgcacggagatggtggcgacccctggggagttttcgctgcgaggcggcata
atggacatctatccattgactgctgaatacccctatcgtattgaactgttcgatacagaa
gtggactcgattcgtacgtttgattcagaaactcagcgttcacatgaaaagctgaaagaa
gtttttataggcccagcaacggaactgttgttacgggatgaggactttgtcagggcgtat
catcgcttggaggaagcgctcagccactcgttacagaagctgactaaatcagaggcaaaa
gaaacattaaatcaattcattgaagaagacctggatcggcttaaacagcaggaacgtttt
caggaaatatataaatatattggttacttttacgaccggcctgtaagtttactagattat
ctgccaaagaatggtctgctcattctcgatgaaatgagtcggattcaggaaacggcgaac
cgtcttgatcaggaagaggccgaatggcaccagagtttattggaagcaaaccaaatggtt
cgtgatttgaagatatcctatgactggcatgatacatgggcgaagatggaacatccgcgc
ctttatatgtctgtgttcatgcgtcatattccaaatacgcatccgcaaaatatcgtcaat
atatccagcaggcaaatgcagcagtttcacgggcagatgaatttactaaaaagtgagatg
gaccgctggcagaagcaggattactctgtcatcattctagctcctgatgaaaatcgccag
gaaaaaattcagtccgtactcgaagattatgatatggaagcggttattgcgaaggatgaa
gtgaaattaccgcttactaaaccaacgatcatgatcgggaacataagcagtggatttgaa
tggccgatgcaccacctcgccgttttaacggaaaatgaactgttcaagaaacgaactgct
aaaccgaagcgaaaacagaaaatgtcaaatgcggaacggattaagaattatcaagagtta
aaagtgggtgactatatcgttcatgccaaccacggtatagggaaatatctcggaattgaa
actcttgaaatgaatggcaatcacaaagactttttgatggtgaaatattctgggaacgat
aagctttatgtacctatcgatcaaatagatttgatccaaaaatatgtaggctcagaagga
aaagagccgaaggtgtataagcttggcggcagtgaatggaataaggtgaagcgccgtgtt
caatcttctgttgaagatatcgctgatgatttgattcaactgtacgcggagcgtgaagca
tcgaaaggatatgccttcagtaaagatgatgaaatgcaaagagaatttgagacagctttt
ccatatgaagaaacagaagaccaaatccgctgtattgaagaaatcaaagaagatatggaa
cgaatcagaccgatggatcgtctgctttgcggcgacgtaggatacgggaagacagaagta
gctatccgtgcagcttttaaagcgatcgtcgatggaaagcaggtcgctattttagtccct
acgacgattttagctcaacagcactatgagacccttcaggaacgttttcaagggtttggg
attaatatcggtcttatgagccgtttccgtacgagaaaacaacagaaagagacgacagac
cgtataagaaaaggtcttgatgatattgtagttggtactcatagaattttatctaaagac
gttcagttcaaggatcttggtctattaattgtagacgaagagcagcgctttggggtgaag
cacaaagagaaaatcaagcagttgaagcataacgttgacgttttaactttaaccgctacc
ccgataccgaggacacttcacatgtccatgcttggagtaagggatctgtctgtcattgaa
accccgcctgcgaaccgcttcccgattcaaacttatgtgcttgagtataacccgattttc
ctgagagaagctgttgaacgggaaatggcccgcgacggtcaagtctttttcttattcaat
agagtagagaatattgagcggatggcgcaggaaatcgctgagctggttcctgaagcccgt
gtgacatttgcacatggtcaaatgaatgaaacagagttagagaatgtcatgttttccttc
ttagaaggggaattcgatgtgctcgtcagcacgacaattattgaaacgggagtagacatt
ccgaatgttaacactttgattgtttatgatgcggatcgaatggggctcagtcagctttat
cagcttcgcggacgtgttggacgttccaaccgagtcgcctatgcctactttacttatcaa
aaggacaaagttttaactgaagttgctgagaaacgcttgcaggcgattaaggagtttaca
gagcttgggtccgggtttaagattgcgatgcgcgacttatccatccgtggagccggtaat
cttttaggctcacagcagcatgggtttattgattctgtaggatttgatatgtattctcaa
atgctcaaggatgcgatcgaggctaaacgtcagggtaaagagccggaagctgtccagcct
tttcagccggaacttgatatgtctatggacgcctatatccctgaagagtatatccgtgaa
gaaaagcagaaaatcgacatgtataaacagttccaggcgatagaatctgtggaagatatc
catgatcttcgcgatgagcttattgatcgtttcggggattatccagaagaagtagagaat
ctattccgtgtgtcttcgatccgcctatatgcgaagcaggcgagaattgagtccatatct
gagaagaagaaaaaacttgaaatggttatggaatcggaacaaagccagcaaattgacgga
gcaaaactgtttgaatttgccaataaatacggacggattgtccagcttggtacggaagat
aaccagttaaaagtaaccttcaattgggatcgaaaatctcagctcaagcgttatgagatt
gtagaggagttcatcagtaaacttccagaaatggcacgggaaacgacaacggcataa
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integrated database retrieval system
