Heliomicrobium modesticaldum: HM1_0084
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Entry
HM1_0084 CDS
T00653
Symbol
dnaE
Name
(GenBank) DNA polymerase iii alpha subunit, putative
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hmo
Heliomicrobium modesticaldum
Pathway
hmo03030
DNA replication
hmo03430
Mismatch repair
hmo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hmo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HM1_0084 (dnaE)
03430 Mismatch repair
HM1_0084 (dnaE)
03440 Homologous recombination
HM1_0084 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hmo03032
]
HM1_0084 (dnaE)
03400 DNA repair and recombination proteins [BR:
hmo03400
]
HM1_0084 (dnaE)
Enzymes [BR:
hmo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HM1_0084 (dnaE)
DNA replication proteins [BR:
hmo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HM1_0084 (dnaE)
DNA repair and recombination proteins [BR:
hmo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HM1_0084 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
ABZ82709
UniProt:
B0TI36
LinkDB
All DBs
Position
complement(71308..74934)
Genome browser
AA seq
1208 aa
AA seq
DB search
MNSQNHTRAKANRRFVHLHVHSEYSLLDGAARIDKLVDRAAELDMPALAITDHGVMYGVI
EFYKKAKARGVKPIIGCEVYVASRTMLDRDPQKDSDQHHLVLLAKDIEGYRNLTALVSQA
HTEGFYYKPRVDHDRLARHSKGLIALSACLAGEIPRLLLNSQERQARERAAFYRDIFGCD
NYYIELQDHDIPAQKQVNRSLIRLAGELGLGLVATNDVHYVERKDAYIQDVLLCIQMGKT
LQDTERMKFDGAEFYLKSAREMAMLFGEVPEALFNSLAIAEACDLQFDFSKQHLPAYPIP
DEPAFIQWRREHERAPWPGLPWGDAEQYLTYLCSQGMTWRGCAKRDDYRRRLAFELQTIC
RMGFAGYFLIVQDFCAFARREGILVGPGRGSAAGSLVAYVLGITDIDPIEYNLLFERFLN
PERISMPDIDIDFDFVRRSEVIDYVVHKYGSDRVAQIITFGTMAARAAVRDVGRVLNLPL
ADVDKVAKAIPAELGMTIEKAIEISPELRALCQDQRISHLVETARAIEGMPRHASTHAAG
VVIAPSPLIDYLPVQRGADGGVTTQFPKDTVEEIGLLKMDLLGLKTLTLIGDVIDKIRRS
RGLQLKLKDLPLDDPKTFQLLSRADSLGVFQLESSGLRAILRELKPNSFDDIIALVALYR
PGPLQSGMVDDFIRRKHGQTTVQYLHPALEPILKDTYGVILYQEQVMRIASELAGFTLGE
ADMLRRAMGKKKPDVIAGLRQQFVEGCAAHHISEKTAGDIFDLMEFFAGYGFNKSHSAAY
ALIAYQTAYLKANYPVEFMAGLLTSVADSSEKVAQYVDECQRLGIRVLPPDVNASEIDFS
VVADPLTGGLQIRFGLAAVKNVGRGAIDAILLARETGGPFTSLDDFCTRIDNRQANRRVL
ESLIKAGALSSLGKRRPLLQILDKCMEVAARRQRDLATGQMNLFDFGGFGGEGGRGEPFE
AGALSDFSGFSSGLSAETAVPLPEIADFPHREILAMEKELLGIYFSGHPLEELRPWLEQQ
ISMTIARIQPDNDQQKVKLGGVIHALRRTTTKKGQLMAYFTLEDWSGGVDVLVFPRTFEK
CAEKIQDDAAVIVEGKIHYEEENKRIFCENLWAIDPALREKKVVEGKPNGETRQPVLHLW
IPEASTDMAAREKLDAICRAHAGSTPVQLNFLVDRKVVPKAVGVTLSPALRSALKAHFRE
IRMKIVWE
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtcaaaaccatacaagggcaaaggcgaatcgacggttcgttcacctccacgtc
cacagcgaatacagcctcctcgacggcgcggcccgcatcgacaagctggtcgatcgcgcc
gccgaactggatatgcctgctctggccatcaccgaccacggcgtcatgtacggcgtcatc
gaattttataaaaaagccaaagcccgcggcgtcaaaccgatcatcggctgcgaggtctat
gtggcctcgcggaccatgttggaccgcgatccccagaaggatagcgaccagcaccacctg
gtgctgctggcgaaagacatagaaggctaccgcaacctgacggcgctcgtctcccaggcc
catacggaaggcttctactataagccgcgcgtcgaccatgaccgcctggcccgccacagc
aaaggactcatcgccctgagcgcctgcctggccggcgagatccctcgcctgctcctcaac
agccaggaacggcaggcgagggaacgggcggccttttaccgggatatcttcggctgcgac
aactactacattgaactgcaagaccatgacattcctgcgcagaagcaggtgaaccgcagc
ctgatccgcctcgccggcgaattgggactcggcctggtggcgacgaacgacgtccactat
gtggagcgcaaagatgcctacatccaggatgtgctcctgtgcatccagatgggcaagacc
cttcaggacacagagcggatgaagttcgacggcgctgagttttacctgaaaagcgcgcgg
gagatggcgatgctttttggcgaagtccccgaagcgctgttcaacagcctcgctatcgcc
gaggcctgcgatctccaatttgacttcagcaagcaacacctgcctgcctatccgattcct
gatgagccggcctttatccagtggcggcgcgagcacgagcgcgcgccttggccgggcctt
ccctggggcgatgcggagcagtacttgacttacctttgcagccaagggatgacctggcgt
ggttgcgccaagcgcgatgactaccgccgccgccttgccttcgagttgcagaccatctgc
cggatgggttttgccggctacttcctgattgtccaggacttctgcgccttcgcccgccgc
gagggcatcctcgtcggccccggccgggggtcggctgccgggagcctcgtcgcctatgtg
ctgggtatcaccgacatcgaccccatcgaatacaatctgctcttcgaacgctttttgaac
cctgaacggatctctatgccggatattgacatcgactttgacttcgtgcggcggagcgag
gtcatcgactatgtggtccacaaatacggctccgaccgggtcgcccagatcatcaccttt
ggaacaatggctgctcgcgccgccgttcgcgatgtaggtcgcgtgcttaacctgcccttg
gccgatgtagacaaggtggctaaggccatcccggctgaactgggcatgactatcgagaag
gccatcgagatcagtcccgaactgcgagccctctgtcaggaccagcgcatcagccatctc
gtcgagacggcccgggccatcgaggggatgcctcgccatgcctccacccatgccgccggc
gtcgtcatcgcgccgtcgcccctgatcgactacctgccggtccagcgcggcgctgatggg
ggtgtcaccacccagtttccgaaagacaccgttgaagagatcggccttttaaaaatggat
cttttggggttaaagacgctcaccctgatcggcgatgtgatcgataagattcgccgatcc
cgcggcctgcaactaaaactcaaggacctgcctctcgatgatccgaaaacttttcaactg
ctaagccgcgccgacagcctcggcgtctttcaattggaaagctcggggctgcgggcgatc
ctgcgggaactgaagccgaacagcttcgatgacatcatcgccttggtggccctctaccga
ccgggcccccttcaatcgggcatggtggacgatttcatccgccgcaaacacgggcagacg
acggtccagtatctccacccggccctcgaaccgatcctgaaggacacctacggcgtcatc
ctctaccaggaacaggtcatgcgcatcgccagcgaactggccggcttcaccctcggcgaa
gccgacatgctgcggcgcgccatgggcaaaaaaaagcccgacgtcatcgccggactgcgc
cagcagtttgttgaaggctgcgccgcccatcacatttccgaaaagacggctggcgacatt
ttcgacttgatggagttttttgctggttacggcttcaacaagagccattcggctgcctat
gccctgatcgcttaccagacggcttacctgaaggccaactaccccgtcgagttcatggcc
ggcctcttgacgagcgtcgccgattcgtcggaaaaggtggcccagtatgtcgatgagtgc
cagcgcctcggcatccgcgtcctgccgcctgatgtgaacgcctcggagatcgatttttcc
gtcgtcgccgacccgctcaccggcggcctgcagatccgcttcggccttgcagccgtgaaa
aacgtgggccgcggcgccatcgacgcgatcctgctggcccgcgaaacaggcggccctttc
acctccctcgacgatttctgcactcgcatcgacaaccgtcaagccaaccggcgcgtcctg
gaaagcctgatcaaggcaggggcgctctcctccctgggcaagcgccggccccttctgcag
atcctcgacaagtgcatggaggtggccgcccgccgccagcgtgacctggcgacggggcag
atgaacctctttgactttggcggttttggcggcgaagggggacggggcgagcctttcgaa
gccggagcgctttccgacttctccggattttccagcgggctgtctgccgagacagccgtc
cccctgccggagatcgctgacttcccgcaccgtgagatcctggccatggagaaagaactg
ctcggcatctacttcagcggccatcccctcgaagaactgcggccctggctcgaacagcag
atttcgatgacgatcgctcgcatccagccggacaatgaccagcagaaggtgaaactgggc
ggggtgatccacgctctaaggcggaccaccaccaagaaaggccaattgatggcctatttc
accctcgaggattggagcggcggcgtcgatgtgcttgtcttcccgcgcaccttcgaaaag
tgcgccgaaaaaattcaggatgacgccgcggtcatagtagaaggaaaaatccactatgag
gaagaaaataaaagaatcttttgcgagaacctttgggcgatcgatcccgccctcagagaa
aaaaaggttgtcgagggcaaacccaacggcgaaacccgtcaaccggtgctgcatctatgg
atccccgaggcctcgacagacatggccgcccgggaaaagctcgacgccatatgccgcgcc
catgcagggtcgacgccggttcaattgaacttcttggttgatcgcaaagtcgtccccaag
gccgttggggtgaccttgtctccggcgctgcggtcagcgctgaaggcgcactttcgagag
attcgcatgaaaatcgtctgggaataa
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