Heliomicrobium modesticaldum: HM1_0721
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Entry
HM1_0721 CDS
T00653
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hmo
Heliomicrobium modesticaldum
Pathway
hmo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hmo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HM1_0721 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hmo03400
]
HM1_0721 (mfd)
Enzymes [BR:
hmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HM1_0721 (mfd)
DNA repair and recombination proteins [BR:
hmo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HM1_0721 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
AAA_22
UB2H
IstB_IS21
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
ABZ83834
UniProt:
B0TBA7
LinkDB
All DBs
Position
1270882..1274625
Genome browser
AA seq
1247 aa
AA seq
DB search
MAEKALSGNLFEYIAQTTEFQHLWSNWKRGRRQQAVFGLSASQRTALMATMARRLGHPLC
VVTHSIQQARRIAEDLQVLLPDEEVLSFPATEVMPYEVLTSSHELLAQRLDVLSRLARRE
PVTVVTTIDALMKKLVPPAVMAEADLEFIVGCRMELSHIQERLHYLGYQRTPMVEAPGQY
SLRGGILDVYPLTRSLPARIEFFDDEIDSIRLFDVETQRSKEKQDRYAAGPAREMLLAAE
TLAQGRRELEKEAATARERLLQSGCQEAAARLQAKIDSYLEQLDEGIWVEGLEQFQNFFY
PDQVSLFSYLHPETIVFWDEPTRLKESAEAKEQEISETFVHLLEAGSVLPAQRNVYRHYN
DLVEELAGHRVIHLALLAKKIERVTVEDTIQFNAKNMHPFLGKLDMLAEELKNYKKRRMA
VLILAASTVRRDRICDALRDYGVEAQPVPGIDAELHPGTVAVGVGQLEAGFELVQARLVL
ITDLEIFGREKRPRKPRKSAREGQRIDSFVDLALGDYVVHVNHGIGRYMGVEKLEVGGVH
KDYLVIRYAGEDRLYVPTDQVHLIQKYVGAEGVAPKLYRLGGNEWHKVKQKVKDSVRELA
GDLLKLYAARESKPGYAYSADTPWQKEFEEAFPYEETPDQARSIAEVKTDMEKAKAMDRL
LCGDVGYGKTEVAIRAAFKAVQDGKQVAILVPTTILAQQHYNTFRERFSGYPVRVDVLSR
FRSPKEQKASLEGLKSGEVDIVIGTHRLVSNDVSFKDLGLLIIDEEQRFGVAHKEKIKHL
KENVDVLTLSATPIPRTLHMSLVGLRDMSIIETPPEDRYPVQTYVVEYNPELIREAVRRE
LNRGGQVYYVRNRIEDLDRIARDLGALVPDARIVVGHGKMREDQLEQVMLDFLEGEYDIL
VCTTIIETGLDIPNVNTLIVDGADLMGLSQLYQLRGRVGRSNRLAYAFFTYRKDKVLTEV
AEKRLHAIREFTELGSGFKIAMRDLEIRGVGNLLGPEQHGQMASVGFDLYCRLLEEAIQE
LKGAKPEEAPETFVDIRVDAFIPDGYMADSLSKVQFYKRLLAARTVDQVEALEEEMEDRF
GDPPEPVENLVSLSRIKAYGQQAGVSAVQQEKEELRIRFFPHAKVEAKAVSALVQHLGRK
VNFSATGGFEIRIKPGRVKPRELLRLLEHSLAIIAGCGQGGEEGNGAAAGRGLSVDKRTV
DGKAAAYGKSAGENAGARASASAAFGAGTAPRSAGAQTAKWPPVGRK
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaaaggcccttagcggcaacctttttgaatatatcgcgcagacaacggagttt
cagcacttatggtcaaactggaagcgggggaggcgccagcaggccgtttttggcttgtcc
gccagccagcgcacggcgctgatggccaccatggcccgccgtttgggccatcctttgtgc
gtcgtcacccattcgattcagcaagctcgccggattgccgaggacctgcaggtgctgttg
ccggacgaggaggttctatcgttcccagccacggaggtgatgccctacgaggtgctcacc
tccagtcacgagctgttggcccagcgcctcgatgtgctgtcccgcctggcccgccgcgag
ccggtgacggtagtgacgacgatcgacgccctgatgaagaaacttgttcccccggcggtg
atggctgaggcggatctagaattcatcgtcggctgccggatggaactgagccatatccag
gagcggcttcactatcttggttaccagcggacgccgatggtggaggcgccaggccaatac
tccctccgcggggggatcctggacgtgtaccccctcacccggagcctgccggcgcgcatc
gagtttttcgatgacgagatcgactccatccgcctctttgatgtagagacgcagcgttcg
aaggagaaacaggaccgctacgccgcaggtccggcgcgggagatgctgctggcggcggag
accttggcccaaggccggcgggaactggagaaggaagcggcgaccgcgcgggagcgactg
ctccaatcaggttgccaggaggcggcggcgcggctgcaggcgaagattgacagctatctg
gagcaactggacgagggcatctgggtggaagggttggagcagtttcagaactttttttac
cccgatcaggtctccctcttcagctacctgcatccggagacgatcgtcttttgggacgag
ccgacacgcctgaaagagtcggctgaagccaaggaacaggagatctcagagacctttgtc
cacctgctcgaagcgggcagcgtcctgccggcgcagcgcaacgtctataggcactacaac
gacctcgtcgaggaactggccggtcatagggtgatccacctggccctgttggccaaaaag
atcgagcgggtcaccgtcgaggacacgatccaattcaacgccaagaacatgcatcccttt
ctcggcaagctcgacatgctggccgaggagttgaaaaactataaaaaacgccggatggcc
gtcttgatcctggccgcctcgacggtgcggcgcgaccgcatctgtgacgccttgcgcgat
tacggtgtcgaggcgcagcccgtccccggcattgatgcagagctgcatcccgggacagtc
gccgtcggcgtgggccagttggaggccggcttcgaactggtgcaggcccggctggtcctg
atcaccgatttggagatcttcggccgcgagaaacggccgcgcaagcctcgcaagtcggcc
cgggaaggccagaggatcgacagcttcgtcgacctggccctgggcgattatgtggtgcac
gtcaaccacggcatcgggcgatatatgggcgtagaaaagcttgaagtgggcggcgtccac
aaggattatctggtgattcgctacgccggagaggaccgcctctatgtgcccactgaccag
gtgcacctgattcagaagtatgtcggcgccgaaggggtggcccctaagctctaccggctc
ggcggcaatgagtggcacaaggtcaagcagaaggtcaaggattcagtccgcgagctggcc
ggcgatctgctcaagctttacgccgcccgggagagcaagcccggctacgcctattcggcc
gacacgccctggcagaaggagtttgaggaagctttcccctacgaggagacgcccgatcag
gcccgttccatcgccgaggtcaagacagatatggaaaaggcgaaggccatggaccgcctg
ctctgcggcgatgtgggctacggcaagacggaggtggccatccgggccgcttttaaggcc
gtccaggatggcaagcaggtggcgattctggtgccgacgacaatcctggctcagcaacac
tataacaccttccgggagcgtttcagcggctatcccgtccgggtcgatgtgctctcccgc
tttcgctcgcccaaggaacaaaaggcctccctggaggggctcaaatcgggcgaggtggat
atcgtcatcggcacccaccgtctcgtctctaacgacgtgtccttcaaggacctgggtctg
ctgatcatcgatgaagagcagcgctttggcgtagcccataaggagaagatcaagcacctg
aaggaaaacgtcgatgtgctcaccctgtcggcgacgccgatcccgcggaccctgcacatg
tccttggtggggctcagggacatgtcgatcatcgagacgccgccggaggaccgctacccc
gtccagacctacgtggtcgagtataaccctgagttgatccgcgaggctgtccgccgtgaa
ctgaaccgaggcggacaggtctactatgtgcgcaaccggatcgaggacctggatcgcatc
gcccgtgacctgggtgcgctcgtccccgatgcccgcatcgtcgtcggccacggcaagatg
cgcgaggatcagttggaacaggtgatgctcgatttcttggaaggcgagtacgacatcctc
gtctgcaccaccatcattgaaactggcctcgacatcccgaatgtgaacacgctcatcgtc
gacggcgccgatttgatgggcctctcgcaattgtaccagctgcgcggtcgcgtcggtcgc
tccaaccggctggcctacgccttttttacctaccgcaaggacaaggtgctcaccgaggtg
gcagagaagcgcctccatgccatccgggagttcaccgaactcggttccggctttaagatc
gccatgcgcgacctggagatccgcggcgtcggcaacctgctcggtcccgagcagcacggc
cagatggcctcagtcggcttcgacctctattgccgtctcttagaggaagcgatccaggag
ttgaagggcgccaagccggaagaggcgccggagaccttcgtggatatccgcgtcgacgcc
ttcatccctgacggttacatggccgattcgttgtctaaggtccagttctataagcggctt
ttggcggcgcgcacggtggaccaggtggaggcgctggaggaggagatggaggaccgcttc
ggcgatcctcccgaaccggtggaaaacctggtcagtttgagccggatcaaggcatacggc
cagcaggccggtgtctcggcggtgcagcaggaaaaagaggaactgcgcatccgcttcttt
ccccatgccaaggtggaggccaaggccgtttccgctcttgtgcagcaccttggccgcaag
gtcaatttttcggccaccggcggctttgagatccggatcaagccgggccgtgtcaaaccg
cgggaactgcttcggttgctcgaacattcgctggccatcatcgccggctgtggccagggt
ggggaggaagggaacggggcagccgctgggcgaggcctttcggtcgacaagcgcacggtc
gatggcaaagcggcagcctacgggaaaagcgccggcgaaaacgctggcgcgagagccagc
gccagcgctgctttcggcgctggcacagcccctcggagcgccggcgcacagaccgccaaa
tggccgcctgtggggcgcaagtag
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integrated database retrieval system
