Heliomicrobium modesticaldum: HM1_1371
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Entry
HM1_1371 CDS
T00653
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hmo
Heliomicrobium modesticaldum
Pathway
hmo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hmo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HM1_1371 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hmo03021
]
HM1_1371 (rpoC)
03400 DNA repair and recombination proteins [BR:
hmo03400
]
HM1_1371 (rpoC)
Enzymes [BR:
hmo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HM1_1371 (rpoC)
Transcription machinery [BR:
hmo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HM1_1371 (rpoC)
DNA repair and recombination proteins [BR:
hmo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HM1_1371 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ABZ83948
UniProt:
B0TC49
LinkDB
All DBs
Position
1393555..1397097
Genome browser
AA seq
1180 aa
AA seq
DB search
MLDVNNFDRMRIGLASPDLIRQWSSGEVKKPETINYRTLKPERDGLFCERIFGPTRDWEC
HCGKYKRVRYKGIVCDRCGVEVTRSKVRRERLGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRSLEKVLYFVAYIVIEQGDTPLMKKQLLTETEYREHREKYGNRFRAGMGAEAIKELLV
EMDLEQLCRELRQELKEVTGQRKVRAIRRLEVVEAFKNSGNRPEWMIMDVIPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKE
MALELFKPFVMKKLVEDGHAHNIKSAKRMVERVKNEVWDVLEDVIAEHPVLLNRAPTLHR
LGIQAFEPVLVEGRALQIHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARNLMLSAHNIL
NPKDGRPVATPTQDMVIGSYYLTIEREGAKGENMIFASPDEAIAAYDAKSVHLQARIRVR
PTARLQEALEFAKSEARSFDEQGRLMTTVGRLIFNSVIPPKVGYVNEVVGKKQLGNIVAR
CYDKLGISETAAMLDGIKKLGYTFSTRAGITVGITDVEVPEEKRRLIAEADSFVEKVEQQ
YRRGLITEEERYQKVIDIWNKTTDGVTQALMRTLDKFNPVYMMANSGARGNIQQIRQLAG
MRGLMADPSGRIIDLPIKANFREGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVD
VSQDVIVREIDCGTHEGIPVEAIVDGKQVIEKLSDRLTGRYALEEIVDPETGEKLAAYNE
EIQADAAERIDQLIKQGKLAHNAVYIRSVLTCRTRYGVCRRCYGRNLATGRSVEIGEAVG
IIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEELFEARKPKGLAIIAEQDGIVRI
VDNKGRKDIEIVTDDGESHHYAIPYNSRLKVEDGQRVQAGTELTEGSVNPHDMLRVKGIQ
GVQTYLLREVQRVYRLQGVDINDKHIEVMVRQMMRKVKVEEPGDTDLLPGGLIDIADFEA
ENLKAIEAGLEPATARPILLGITKASLATDSFLSAASFQETTRVLTEAAIKGKVDPLLGL
KENVIIGKLIPAGTGMSRYRNIQVLVGDEIDEARLEDGMA
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgatgtcaataatttcgaccgcatgcgcatcggcctggcttcaccggatctgatc
cggcaatggtcgagcggggaagtgaagaagccggaaaccatcaactaccggaccctcaaa
ccggaacgggatggcttgttctgtgagcggatcttcggccccacccgcgactgggagtgt
cactgcggcaaatacaaacgggtccgctacaagggcatcgtctgtgaccgctgcggcgtc
gaggtcacccgctccaaggtccgtcgggaacgccttggccatatcgaactggcggcgccg
gtctcccacatctggtacttcaaaggcatccccagccggatgggcctgttgctcgacatg
tcgcctcgttcgctggagaaagtcctctactttgtcgcctacatcgtcatcgaacagggc
gacacgccgctgatgaaaaagcagctcctcacggagacggaataccgggaacaccgggaa
aaatacggcaaccgcttccgcgccggcatgggcgctgaggcgatcaaagagctgcttgtc
gagatggacctggaacaactctgccgggaattgcgccaggaattgaaagaggtgacgggg
cagcggaaggtgcgcgccatccgccgcctggaggtcgtcgaagccttcaaaaattccggc
aaccgtcccgaatggatgatcatggacgtcatccctgtcatcccgccggaactgcgcccc
atggtgcaactggacggcggtcgattcgccacctctgacctgaacgatctctatcggcgc
gtgatcaaccggaacaaccgtcttaaacggttgctcgatctgggcgcgcctgatatcatc
gtccgcaacgaaaagcggatgctgcaagaagccgtcgacgccctcatcgacaacggtcgc
cgcggccggcccgtcaccggaccgggcaaccgccccctcaagtccctctcagacatgctc
aagggcaaacagggccgcttccgccagaacctgctcggaaaacgggtcgattactccgga
cgttccgtcatcgtcgttggtcccgaactgaagctgcaccagtgcggcctccccaaggag
atggcgctggaactgtttaagccctttgtcatgaaaaagcttgtcgaagacggccatgcc
cacaacatcaagagcgccaaacggatggtggaacgcgtcaaaaacgaggtctgggatgtc
ctggaagatgtcatcgccgaacaccccgtcctgctcaaccgggcgccgaccctgcaccgc
ctcggcattcaggcctttgaaccggttctcgtcgaaggccgggcgctgcagatccacccg
ctcgtctgtacggcatacaacgctgacttcgacggcgaccagatggccgtccacgtgccc
ctctctgctgaagcccaggccgaagcgcgcaacctgatgctgtcggcccacaatatcctc
aacccgaaggatggccgacctgtcgccacgccgactcaagacatggtcatcggttcctac
tacctgaccatcgagcgggaaggcgccaagggcgaaaacatgatcttcgccagccctgat
gaggccatcgccgcctatgacgccaagagcgtccacctgcaggcgcggatccgcgttcga
ccgacggcgcgtttgcaggaagcccttgagtttgccaaaagcgaagcccgctccttcgat
gagcagggacgccttatgaccacggtgggacggttgatcttcaacagcgtcatcccgccc
aaggtcggctacgtcaatgaggtcgtcggcaagaagcagttaggaaacatcgtcgcccgc
tgctatgacaagttggggatcagcgagacagctgccatgcttgacggcataaaaaaattg
ggttacaccttctccacccgtgccggcatcaccgtcggcatcaccgacgtggaagttcct
gaagagaagagacgcctaatcgccgaggccgacagctttgtagaaaaggttgaacaacag
taccgccgcggtttgatcaccgaagaagaacgttaccagaaggttatcgacatctggaac
aagacgacagacggcgtcacccaagccttgatgcggacactggacaaattcaaccccgtc
tacatgatggccaactcgggcgcgcgcggcaacattcagcagatccgccaactcgccggt
atgcgcggcttgatggccgacccgtcgggccgcattatcgacctgccgatcaaagccaac
ttccgcgaaggcctcaccgttttggaatacttcatctccacccacggcgcccgcaaaggc
ctcgccgatacagcgctgcggacagccgactcagggtacctgacccgtcgtctcgtcgac
gtatcccaggatgtcattgtccgggagatcgactgtggcacccacgaaggcatccctgtt
gaagcgatcgtcgatggtaagcaggttattgaaaagctgtccgatcgcctgaccggccgt
tacgccttggaagagatcgtcgatcccgagacgggcgagaagctcgctgcgtacaacgaa
gagatccaggcggacgctgccgagcggatcgatcagttgatcaaacagggcaagctggcc
cataacgccgtctacatccgctccgtcttgacctgccgcacccgttacggcgtctgccgc
cgttgctacggtcgcaacctggccaccggccgttccgtcgagatcggcgaggctgtcggc
atcatcgccgcccagtccatcggtgaaccggggacgcagttgacgatgcgcaccttccac
accggtggcgtcgccggcgacgacatcacccaaggtctgccgcgggttgaagaactgttt
gaagcccgtaaaccgaaaggcctggcgatcatcgccgaacaggacggcatcgttcggatc
gttgacaacaagggtcgcaaggatattgagatcgtcaccgacgacggcgaatcgcaccac
tatgctattccctataactcccgcctgaaagttgaagatggccagcgagtgcaagccggt
actgaactgactgagggctccgtcaacccccatgacatgttgcgcgtcaaggggatccag
ggcgtccagacctacctgttgcgggaggtccagcgggtctaccgactccagggcgttgac
atcaacgacaagcacatcgaggtcatggtccggcagatgatgcgcaaggtgaaggtcgaa
gagccgggtgatacggatctgcttcccggcgggctcatcgacatcgctgactttgaggcc
gaaaacctcaaagccatcgaggccggcctggaaccggccaccgcccgcccgatcctgctg
ggcatcaccaaggcctcgctggccaccgactccttcctctcagccgcctccttccaggaa
acgacgcgagtgctcaccgaagccgccatcaaaggcaaagtggaccccttgctcggtctg
aaagaaaacgtgatcatcggtaagctgatcccggccggcactggcatgtcgcgctaccgc
aacattcaagtgctcgtcggcgacgaaatagacgaagcgcgcctggaagacggcatggcc
taa
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