Heliomicrobium modesticaldum: HM1_2334
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Entry
HM1_2334 CDS
T00653
Name
(GenBank) conserved hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hmo
Heliomicrobium modesticaldum
Pathway
hmo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HM1_2334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmo03019
]
HM1_2334
Messenger RNA biogenesis [BR:
hmo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HM1_2334
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_6
TruB_C
Motif
Other DBs
NCBI-ProteinID:
ABZ84867
UniProt:
B0THT4
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All DBs
Position
2310150..2311811
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AA seq
553 aa
AA seq
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MGAGDKVTIIPLGGLGEIGKNMTIIKVNQELLIIDCGIMFPEDEMLGIDVVIPDITYLLE
NRDAIRGIILTHGHEDHIGALPYMLKELKVPVYGTRLTLALAETYLKEQNMQTAAIFHTV
KPREIIRVGAFRVEFIRVCHSIPDAVAVAIHTPAGVIVHTGDFKFDQTPVDSEATDYFRL
AQLGESGVLALLSDSTNAEKPGFTPSEKAAYGKLEEVFRLSKGRIIVTTFASSLYRIQQT
FQVAARYRRKVVVVGKSMQEVVQVARANGYLEIPPGTLCDEENWNIIPHDKLVLLTTGHL
GEPMSALLRGPWTDARLSNYQPGDTVIISASPVAGSEKSVHRTIDGLCKLGADVYHEASG
GHISGHASQEELKMMINLIRPKYFIPIQGEYRMLIRHARLAGDVGLSADNIFVLENGQVL
ELTPKKGSLAARVAAGRVLVDGLGVGDVGNIVLRDRRQLSQDGILIVVITISKESGQVVA
GPDMVSRGFVYVREAEELMEEAKIKVRQALEKSGERRVTEWAAIKTNVRDVLSKFLYEKT
RRRPMILPIIMEV
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcgggggacaaagtaaccatcatccccttaggcggtttaggcgagatcggcaaa
aatatgaccatcatcaaagtcaatcaggaactgttgatcatcgactgcgggatcatgttt
cccgaagacgagatgctcggcatcgacgtggtcatccccgacatcacctacctgcttgaa
aatcgcgatgccatccgtggcatcatcttgacccacggccacgaggaccacatcggtgcg
ttaccctatatgcttaaggaattgaaagtgcctgtctacggcactcggctcacgctggcc
ttggcggaaacctatctaaaagaacagaacatgcagacggccgccatctttcatacggtc
aaaccgagggaaatcattcgtgtcggtgcttttcgcgtcgaattcattcgtgtctgccac
agcatccctgacgcggtcgccgtggcgatccacacccctgccggcgtcatcgtccatacg
ggcgacttcaagtttgaccagaccccagtcgacagtgaggccaccgactacttccgcttg
gcccaactgggcgagtcaggcgtgcttgccctgctctccgactctaccaatgcggaaaaa
ccggggtttaccccttcggaaaaagccgcctacggtaagttggaagaggtctttcgcttg
tccaagggccggatcatcgtcaccacctttgcgtcgtccctctatcggatccagcagacc
tttcaggtggcagcccgctaccgccgcaaggtcgtcgtcgtcggcaaatcgatgcaagag
gtggttcaggtggcccgcgccaacggctatctggaaattccgccaggcaccctttgcgat
gaagaaaactggaacattatcccccatgacaaattggtcctactgacaaccggacacctg
ggtgagcccatgtccgctttgctgagaggcccttggactgacgcgcgcttgagcaactac
caaccgggcgacacggtgatcatctcagccagtccagtggcgggcagtgaaaaatcggtc
caccggaccatcgacggactgtgcaagctcggcgccgatgtctaccatgaggcgtccggc
ggccacatctccggccatgccagtcaggaagaactgaagatgatgatcaacctcatccgg
ccgaagtacttcatccccattcagggcgagtaccgcatgctgatccgccatgcgagattg
gccggcgacgtgggcctgtctgcggacaacatctttgtgctggaaaacggtcaggtcctt
gaactgacaccaaaaaaaggcagcctggccgctcgggtggccgccggacgtgtcctcgtt
gacggcctcggcgtgggcgatgtaggcaacatcgtgcttcgcgatcgtcgccagttgtcc
caagacggcattctgatcgtcgtcatcaccatcagcaaggaatcgggacaggtcgtcgcc
ggaccggacatggtctctcgcggcttcgtctatgtgcgcgaagcggaagaattgatggaa
gaggccaagatcaaggtgcgccaagccttagaaaagtcgggcgagcgccgcgtcaccgag
tgggcggccattaagacgaatgtccgtgatgtattgtctaagtttttatatgaaaaaacc
cgtcgtcgcccgatgatcctgccgatcatcatggaagtgtga
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