Heliomicrobium modesticaldum: HM1_2374
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Entry
HM1_2374 CDS
T00653
Name
(GenBank) dead/deah box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hmo
Heliomicrobium modesticaldum
Pathway
hmo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HM1_2374
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmo03019
]
HM1_2374
03009 Ribosome biogenesis [BR:
hmo03009
]
HM1_2374
Enzymes [BR:
hmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HM1_2374
Messenger RNA biogenesis [BR:
hmo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HM1_2374
Ribosome biogenesis [BR:
hmo03009
]
Prokaryotic type
rRNA helicases
HM1_2374
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Helicase_RecD
AAA_19
SMC_N
Motif
Other DBs
NCBI-ProteinID:
ABZ84924
UniProt:
B0TII3
LinkDB
All DBs
Position
2363950..2365572
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AA seq
540 aa
AA seq
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MVENKNIANDQDKAKDKVKFGEIELSPKVAKAIFDMGFEEPSPIQAKAIPVIMQGKDLIG
QAQTGTGKTATFGIPMAETLNPRDGRVQALVLCPTRELAIQVAQEISKIGRQNDLKALPV
YGGQSIDRQIRALRYGVQVVIGTPGRILDHLSRKTLRLNNVRMVVLDEADEMLDMGFVED
IEAILKETPEERQTLLFSATMPGPIQQLARQYMKEPEFVTISRDKLTVPLIEQVYYECKE
SQKVDALCRILDMEEIGSSIIFCRTKRGVDELVAALETRGYFAEGLHGDLTQAQRDRVMK
KFRDGKAELLIATDVAARGLDVENVTHVINYDIPQDPESYVHRIGRTGRAGRKGIAITLI
NYREYRQLKLIERVTKARIQRRDLPSMADIVERQKEAHKMKIVKLLDGGHFGEYKSIISE
LAEEYDPMEIAAATLKLLIEGPEAETEKDEAPEFGNTGAEPGMVRLFMNIGRAQGIRPQD
IVRAIAEEAGIPGNVIGVINIYDKFTFVEVPEDVAGRVMGVMHQNMIKGRKISVEPAKAR
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggtagaaaacaagaacatagcaaacgatcaggacaaggctaaggacaaggtaaaattc
ggcgagatcgagttgagcccgaaggtagccaaggccatcttcgacatgggctttgaagag
ccctctcccatccaggccaaggcgattcccgttatcatgcagggcaaggacctgatcggc
caagctcagaccggcaccggcaagacggccaccttcggcatccccatggccgaaacgctc
aacccccgcgacgggcgcgtccaggccctcgtgctgtgccccacccgggagttggccatc
caggtcgcccaggagatcagcaaaatcggccgccaaaacgatctgaaggccctccccgtc
tacggcggccagtccatcgaccgtcagatccgggcgctccgctacggcgtccaggtcgtc
atcggcacgccgggccggatactcgatcacctgagccgtaagacgctgcgcctgaacaat
gtgcgcatggtcgttctcgatgaggccgatgagatgctcgacatgggcttcgtcgaagac
atcgaagccatcctcaaggaaacgccggaggaacggcagacgttgctcttctcagccacc
atgccggggccgatccagcaactggcccgccaatacatgaaagagcccgagtttgtcacc
atctcccgggacaagctgacggttcctctgatcgaacaggtttactatgagtgcaaggag
tcccagaaggtagacgccctctgccgcattctcgatatggaggagatcggttcgtcgatc
atcttctgccgcaccaagcggggcgttgacgaattggtggctgccctggagacgcgaggc
tatttcgctgaaggcctccacggcgacctgacccaggcccagcgggaccgggtgatgaag
aagtttcgcgacggcaaggctgaactgctcatcgccaccgacgtggctgctcgcggtctt
gacgtggagaacgtgacccacgtcatcaattacgacatcccgcaggatccggagtcttat
gttcaccgcattggccggaccggtcgagccggtcgcaagggcattgccatcaccctgatc
aactaccgcgaataccgccagttgaagctcatcgagcgggtcaccaaagcccgcattcag
cggcgtgatctgccctccatggccgatattgttgagcggcagaaggaagcccacaagatg
aaaatcgtcaagctcctcgacggcggccactttggcgaatacaagagcatcatcagcgaa
ctggcagaggaatatgatccgatggaaatcgctgcagctaccctcaaattgctcatagaa
ggccctgaagcggaaacggagaaggatgaagcccctgaattcggcaataccggcgccgaa
ccgggtatggtccgcttgttcatgaacatcggccgcgcccagggcatccgtccccaggac
atcgtccgcgccatcgctgaagaggccggcatccccggcaacgtgatcggcgtcattaat
atctacgataagttcacctttgtggaagtacccgaggacgtggccggtcgcgtcatgggc
gttatgcatcagaatatgatcaaaggccgcaagatcagcgtcgaaccggccaaagcccgc
tag
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