Heliomicrobium modesticaldum: HM1_2413
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Entry
HM1_2413 CDS
T00653
Name
(GenBank) metallo-beta-lactamase family protein, putative
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hmo
Heliomicrobium modesticaldum
Pathway
hmo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HM1_2413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmo03019
]
HM1_2413
Messenger RNA biogenesis [BR:
hmo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HM1_2413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
ABZ84963
UniProt:
B0TIM2
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Position
2400135..2401856
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AA seq
573 aa
AA seq
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MSRPKKSGYRPRRGKTKSKPTSNLPTVSVIPLGGVGEVGKNMLVIEYGDDIIVIDSGVKF
PGEELLGIDLVIPDITYLVQNADRVRGIFLTHGHEDHIGGLPFTLKQIQVPVYGTRLTLG
LVKNKLTEHGLIREAKLHEITADDVVNVGAFQLEFFRVNHSIPDGIGIAIRTPAGLIVHS
GDFKLDQTPVDDKVLEFSKLARYGDEGVLLFICDSTNVERPGYTPSERTVGDTFRSVFAK
TDSRIIIATFASNVHRIQQVIDTAAEFNRKVAVVGRSMVTVVDVSQQLGYLNIPRGMLIE
AEEIDRLPDNQVTIITTGSQGEPMAALTRMATNNHRQVAIRQGDTVIISATPIPGNEKLV
SRTIDNLFRIGADVVYKEVANVHVSGHAAQQEIKLMLNFLRPKYVIPFHGEYRHQATFAK
LGQTMGIPDEHILRVNIGERYELNEEMVQLTGTVEAGSVMVDGIGVGDVGNIVLRDRHHL
AQDGVVIAVVTIDKENGNVLAGPDLVSRGFVFVREAGDMLGEAKSRVKEALTGRNTGTTE
WSVLKNLIRDTLNEFFYQKTKRRPIVLPIIMEI
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgagccgtccgaaaaaaagcggctaccgtccccgccgcggcaagacaaaatcgaagccc
acgtcaaatctaccgacagtaagtgtcattcccctcggtggagtcggcgaagtgggcaag
aacatgctcgtcatcgagtatggcgatgacatcatcgtcatcgactcgggcgtcaagttt
cccggcgaagaactgctgggtatcgacctggtcatccctgacatcacctatcttgttcag
aacgcggacagggtgcgagggatttttctcacccacggacacgaagaccacatcggtggt
ctacctttcacgctcaaacaaatccaggtgcccgtctatggcacccggctgaccttgggc
ctcgtcaaaaacaagttgaccgaacacggactgatccgagaggccaagctgcatgagatc
acggccgacgacgtggtgaacgtaggcgccttccagttggaattcttccgtgtcaaccac
tccatccctgacggcatcggtatcgccatccgcaccccggcggggttgatcgttcactca
ggcgacttcaagctcgaccagacgccggtcgacgataaggttctcgaatttagcaaattg
gcccgttacggtgacgaaggcgtcctgctcttcatctgcgactccaccaacgtggaacgg
ccgggctacaccccgtcggaacggactgtcggcgacaccttccgctctgtcttcgctaag
acagacagccgcatcatcatcgccaccttcgcctccaacgttcaccgtatccaacaggtg
atcgacacggcggctgagttcaaccgcaaggtggctgtcgtgggccgcagcatggtgacc
gtcgtcgacgtgtcccagcagctcggctacctgaacatcccaagagggatgctgatcgag
gccgaggagatcgaccgactccccgacaaccaggtcaccatcattacaaccggctcccag
ggtgagccgatggcggcgctgacccgcatggctaccaacaaccaccgccaggtggcgatc
cgccagggcgacacggtgatcatctcggccacgccgatcccgggcaacgaaaaactcgtc
tcccggaccatcgacaacctcttccgcatcggcgctgacgtggtctacaaggaagtggcc
aatgtccacgtctccggtcacgccgcccagcaggagatcaagctcatgctcaacttcctg
cgccccaagtacgtcattcccttccacggcgaataccgccatcaggccaccttcgccaag
ctgggacagacgatgggcatccctgacgagcatatcctccgcgtcaacatcggcgaacgc
tacgaattgaacgaggaaatggtccaactgaccggcactgtcgaggccggcagcgtcatg
gttgacggcatcggcgtcggcgacgtgggcaatatcgtcctgcgcgaccgtcaccaccta
gcccaggacggcgtcgtcatcgccgttgtcaccatcgacaaggaaaacggcaatgtcctt
gccggaccggacctcgtctcccgcggtttcgtcttcgtccgcgaggcgggtgacatgctc
ggtgaagccaagtcgcgcgtcaaagaggccttgacgggtcgcaatacggggacgacggaa
tggtcagtgttgaagaacctgatccgggacacgctgaatgagttcttttaccagaagacg
aaacggcgtccgattgtgttgcccataataatggaaatttaa
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