Halobaculum magnesiiphilum: K6T50_01630
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Entry
K6T50_01630 CDS
T07527
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hmp
Halobaculum magnesiiphilum
Brite
KEGG Orthology (KO) [BR:
hmp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hmp03016
]
K6T50_01630
Enzymes [BR:
hmp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
K6T50_01630
Transfer RNA biogenesis [BR:
hmp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
K6T50_01630
Prokaryotic type
tRNA splicing ligases
K6T50_01630
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QZP37904
UniProt:
A0A8T8WDV4
LinkDB
All DBs
Position
296476..297993
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AA seq
505 aa
AA seq
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MTDTPETREYDGVELRKVREFVWEIPQEGEMNAPARVLASDPLLEQIADDKTLQQLRNAT
HLPGITTYAACMPDGHQGYGFPVGGVGATDATDGCISPGAVGYDINCGVRMVRTNLTYED
VQGKEEELVESLFANVPSGLGGGGIVEGDVDTVEAVLERGMEWALAEGYATEDDLAHCED
QGRRPDARPEFVSQKAKDRGRNQLGSLGSGNHFLEVQRVTDVFDGAVADSFGMKEDQIVV
LIHCGSRGLGHQVCTDYLRKIEKRHGDLLDRLPDKELAAAPAGSELADEYYGAMCAAINF
AWVNRQLITHRTRRVFERVFRADADELGMELLYDVAHNIAKKEVHEVGVDDDGTAVPTED
AVAHEERELYVHRKGATRAFPAGREEVPAAYRDVGQPVIIPGSMGAGSYVLVGGNESLAQ
TFGSTAHGAGRVMSRTAAKQEYWGETVQDELRDQDHIYVKAQSGATVAEEAPGVYKDVDE
VVRVSDALGIGDKVARTFPVCNIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacacgcccgaaacccgcgagtacgacggggtcgaactccggaaggtccgcgag
ttcgtctgggagatcccgcaggagggcgagatgaacgcccccgcgcgcgtcctcgcgagc
gacccgctcctcgaacagatcgccgacgacaagacgctccagcagctccgcaacgcgaca
catctgccggggatcacgacctacgccgcgtgcatgcccgacggccaccaggggtacggg
ttccccgtcggcggcgtcggcgcgacggacgcgaccgacggctgtatttcccccggtgcg
gtcggctacgacatcaactgcggcgtccggatggtccggacgaacctcacctacgaggac
gtgcagggcaaggaggaggagctcgtcgagagcctcttcgcgaacgtcccctcgggcctc
ggcggcggcgggatcgtcgagggcgacgtcgacaccgtggaggcggtgctcgaacgcggg
atggagtgggcactggcagaagggtacgcgaccgaggacgacctcgcccactgcgaggac
caggggcgccggcccgacgcgcgcccggagttcgtttcccagaaggcgaaggaccgcggc
cgcaatcagctcggcagcctcggctcggggaaccacttcctcgaggtccagcgcgtgacc
gatgtgttcgacggggcggtcgccgattccttcggtatgaaggaggatcagatcgtcgtc
ctgatccactgtggctcgcgcggactcggccaccaggtgtgtacggactaccttcggaag
atcgagaagcgccacggcgacctgctcgaccggctgcccgacaaggaactggcggccgcg
cccgccggctcggagctggccgacgagtactacggcgcgatgtgcgcggcgatcaacttc
gcgtgggtgaaccggcagctcatcacccatcggacgcgccgcgtgttcgagcgcgtgttc
cgcgcggacgccgacgaactcggaatggaactactgtacgacgtggcgcacaacatcgcc
aagaaggaagtccacgaggtcggcgtcgacgacgacggcaccgccgtaccgacggaggac
gccgtcgctcacgaggaacgcgagctgtacgtccaccgcaagggcgcgacgcgcgcgttc
ccggccggccgcgaggaggtgccggccgcctaccgcgacgtgggacagccggtgatcatc
cccgggagcatgggcgccggcagctacgtgctcgtcggcggcaacgagtcgctcgcgcag
accttcggctcgacggcccacggcgccggccgcgtgatgagccgaaccgccgccaagcag
gagtactggggtgagaccgtccaggacgagctccgcgaccaggaccacatctacgtgaag
gcccagtcgggcgccaccgtcgccgaggaggcgcccggcgtgtacaaggacgtcgacgag
gtcgtccgcgtgagcgacgcgctcggcatcggagacaaggtcgcccggacgttccccgtc
tgcaacatcaaggggtag
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