Hippea maritima: Hipma_0465
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Entry
Hipma_0465 CDS
T01456
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hmr
Hippea maritima
Pathway
hmr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Hipma_0465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmr03019
]
Hipma_0465
03016 Transfer RNA biogenesis [BR:
hmr03016
]
Hipma_0465
Enzymes [BR:
hmr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Hipma_0465
Messenger RNA biogenesis [BR:
hmr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Hipma_0465
Transfer RNA biogenesis [BR:
hmr03016
]
Prokaryotic type
tRNA degradation factors
Hipma_0465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
DUF7599
HTH_11
AbiEi_4
Motif
Other DBs
NCBI-ProteinID:
AEA33437
UniProt:
F2LUB1
LinkDB
All DBs
Position
468116..470185
Genome browser
AA seq
689 aa
AA seq
DB search
MSRYAIAILNFLSAKDYKPLSGSELRKALGVSKKRKTAFYKELRRLKKEGKIKKISKSRY
VIALKKSQTPLLKGTLLKRSGFFYLRKGEDEVKLPQLINTVNATEGDEIIVKLQKSNIGI
TSKVVKVLKRRLKNVIGYLVKTPRGWIVNPTDRKVPFVISVGKIDKKLKEGWLVLVEIIS
FVEGKHTTVKGKIVKVYGDPYQLKIDKEVVIDKFGLPYEFSTEVERELEMIAEPTEDEFR
KRTDFRNLPTITIDGEDARDFDDAIDVERTQTGYRLYVHIADVSNYVKKGMSLDKEALQR
GFSVYFPEAVIPMLPFKLSNDVCSLVPDEDRLSVSVIMEISKKGVIKSYDIKESVIRNKR
RMTYKGVQGILDGQIKDEQWLKDRLVIMRELAKTLRSRRFKKGSLDLDIPEPKVIVEDDK
IIEIKEREHLFSHSIIEEFMLAANLCVADFLSRHYEKYIRRVHDDPDPVKLSVLIAFLRK
MGVKFELQDEITSKELQKILKSIKDEKLKKIVSQLMLRSLKRAEYSTQSKGHFALHFENY
THFTSPIRRYPDLVVHRMIKAVLEKKRESFDNLEDITSTIKERELTTENAMFYMNDIKAA
HFMRQYIGEVFDATITTIIPSGFFVRLKEHFVEGFVAVSSLKDDYYEYVEYMYAMVGKRK
KKIFRLGDDVRVMVVNVDKFAGEIDFTVA
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagatatgctatagctattttaaactttttgtcggcaaaagactataaaccgtta
agcggctctgagttgcgtaaggctttgggtgtttctaaaaaaaggaaaacggccttttat
aaggaactaagaagactaaaaaaagaaggaaagataaaaaaaatatcaaaaagtagatat
gtcatagctttaaaaaaatctcaaacgccccttcttaagggaactcttcttaaaagaagt
ggatttttctatttaagaaaaggggaagatgaagttaaactgccccaacttattaatacc
gtaaatgcaacagagggcgatgaaataatagttaaactgcaaaaaagcaatataggaata
acatccaaggttgtaaaggtactaaaacgcaggcttaagaacgtcataggttacctggta
aaaacccccagaggatggattgttaatcctacagataggaaagtaccctttgttattagc
gtagggaagatagataagaagctaaaagaagggtggctggtattagttgagattatatct
tttgttgagggcaaacatacaactgttaaaggcaaaatagttaaagtttacggtgatcct
tatcagttaaagatagataaagaggttgttatagataaatttggcctgccttatgaattc
tcaacagaggttgaaagagaacttgagatgatagcagaaccaacagaggatgaatttaga
aaaagaactgattttaggaacttgcctacaataaccatagacggtgaagatgcgcgggac
tttgatgatgctatagatgtcgaaaggacacaaacaggctataggctttatgttcatata
gccgatgtatctaattatgtaaaaaaaggcatgagtcttgataaggaagcccttcagaga
ggttttagtgtatactttcccgaagctgttatacctatgctgccgtttaagctgtcaaat
gatgtctgctcattggttcctgatgaagataggcttagtgttagtgttatcatggaaatt
tcaaaaaaaggtgttattaaaagctatgatatcaaagagagtgtaataagaaacaagcgg
aggatgacatataagggtgttcaaggcattcttgatggccaaatcaaagatgagcagtgg
ctaaaagataggcttgtgattatgcgtgagcttgctaaaaccttacgcagtagaagattt
aaaaaggggagccttgatttggatatacccgaacccaaggtgatagtagaggacgataag
attattgaaataaaagaaagggagcacttgttttcacattctattattgaagagttcatg
cttgcggctaatctgtgtgttgccgattttttaagtaggcattatgaaaaatatattcgt
agggtgcatgatgacccagatccggtaaagttgagtgttcttattgcttttttgaggaag
atgggcgtaaaattcgaattgcaggatgaaattacatcaaaggagcttcagaaaatttta
aaatccataaaggatgaaaagcttaagaaaattgtatctcaactcatgctaaggtcttta
aaaagggccgaatactcaactcaaagcaaagggcattttgcgctccattttgaaaattac
acgcattttacctcacctataagacgctacccagatcttgtagttcacagaatgattaag
gctgttttagagaagaaaagggaatcatttgataatcttgaagatataacatcaactata
aaagagagagagcttacaacggaaaatgctatgttctatatgaacgatataaaggcggcg
cattttatgagacaatacataggtgaggtttttgatgcgactataacaactataattcca
agcggtttttttgtgagattaaaagagcatttcgttgaggggtttgtggcagtctcaagc
ctgaaggatgactattatgaatatgttgagtatatgtatgcaatggttggcaagagaaaa
aagaagatatttaggttaggtgacgatgtgagggtgatggtggttaatgtagataaattt
gcaggtgaaatagactttacggttgcttaa
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