Hippea maritima: Hipma_0780
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Entry
Hipma_0780 CDS
T01456
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hmr
Hippea maritima
Brite
KEGG Orthology (KO) [BR:
hmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hmr03016
]
Hipma_0780
Enzymes [BR:
hmr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Hipma_0780
Transfer RNA biogenesis [BR:
hmr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Hipma_0780
Prokaryotic type
tRNA splicing ligases
Hipma_0780
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
FANCI_S1
Motif
Other DBs
NCBI-ProteinID:
AEA33750
UniProt:
F2LVG6
LinkDB
All DBs
Position
complement(773268..774443)
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AA seq
391 aa
AA seq
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MIKRIIKKGRIPIKLWTDEIEEGALRQAENLSNLPFAYSHIAIMPDVHEGFGMPIGAIAA
FEDVVIPHAVGVDIGCGIHAIKTNLPQINKKQLQAIVKLIKSAIPLGFKKHKLPQDKNLM
PSPLSKLSKNFVTYKEYDNALYSLGTLGGGNHFIEFQEGSDGFIWIMIHSGSRNLGKQVA
DYYHRLAKKLNERMGYPVPESYELFFLSTKSQEGQMYLEEMNFCIGYAKANRNLMAKRII
GITETVLSKRDIVIEEHDVIHNYASLEKHFSKKVWVHRKGATKASEGDICIILGSQGSES
YIAIGLGNEESFKSCSHGAGRILSRHKARKSLSLANEIKKLNKLGIIHSLNSKRDLDEAP
GAYKDISKVIQNQLDLIKPIIQLRPLAVIKG
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaagaatcataaagaagggcagaatccccataaaattatggacagatgagata
gaggaaggggcacttaggcaggctgaaaatttatccaatcttccattcgcttatagccat
atagctataatgcctgacgttcatgagggttttggtatgccaattggagcaattgcagcc
tttgaggacgtggttataccccatgcggttggtgttgatataggttgtggtatacatgca
attaaaacaaacttacctcaaattaacaaaaaacaactccaggctatagttaaactcata
aaaagtgcaatacctttaggatttaagaaacacaaactaccccaagataaaaaccttatg
cccagcccactctcaaaattaagtaaaaactttgttacttacaaggaatacgataacgca
ctatactctcttggaacattagggggcggtaatcattttatagaatttcaagaaggtagt
gatggttttatctggattatgatacactcaggcagtagaaatctaggtaaacaggtggca
gactattatcacaggcttgccaaaaaattaaatgagagaatgggctaccctgttcctgaa
agctatgaactcttctttttaagtacaaagtcacaggaaggacagatgtaccttgaggaa
atgaacttttgtattgggtatgccaaagcaaatagaaatcttatggctaaaaggatcata
ggcataacagaaacagtcttgagcaaaagagacattgttatagaagaacatgatgtaata
cacaactacgcaagcttagagaaacatttctcaaaaaaggtttgggttcatagaaaagga
gcaacaaaggcatctgagggtgatatatgcataatactaggctcccagggctcagaatcc
tatattgccataggtcttggaaatgaagagagctttaagtcctgctcacacggtgcaggc
agaatcctaagcaggcataaggcaagaaagagcctttctttggccaatgaaataaaaaaa
cttaacaaattaggcattatacactctctcaactcaaaaagggatttagatgaggcacct
ggcgcttacaaagatataagtaaagtaatccaaaatcaattagacttaataaaacccatc
atacaactaaggcctctagctgtaataaagggttaa
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