Helicobacter mustelae: HMU07140
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Entry
HMU07140 CDS
T01191
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hms
Helicobacter mustelae
Brite
KEGG Orthology (KO) [BR:
hms00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hms03032
]
HMU07140 (topA)
03400 DNA repair and recombination proteins [BR:
hms03400
]
HMU07140 (topA)
Enzymes [BR:
hms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HMU07140 (topA)
DNA replication proteins [BR:
hms03032
]
Prokaryotic type
DNA Topoisomerases
HMU07140 (topA)
DNA repair and recombination proteins [BR:
hms03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HMU07140 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
Zn_ribbon_LysW
Zn_ribbon_IS1595
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
CBG39971
UniProt:
D3UHJ9
LinkDB
All DBs
Position
complement(820568..822757)
Genome browser
AA seq
729 aa
AA seq
DB search
MKKLIIVESPAKAKTIQNFLGEEYQVIASKGHIRDLPKMRFGIHIKQESFEARYVIDEDH
QEIAKNIKELAKQSSQVYIATDEDREGEAIGYHITQAIAKDPQSFPRIVFHEITKTAIQD
ALANPRNIDMNKVNAQQARRFLDRIVGFKLSSLVSSKIAKGLSAGRVQSAALKIIIDKER
EIQKFIPLDYYSIEGNFLGLSAQLIAYQGKKLKEQEITEEARAKQMQENLQKNLYTIGDL
QKKSKKSPTPPPFMTSTLQQSASNLLGYSPTRTMSIAQKLYEGVQTHQGYMGVITYMRTD
SLNIAKIAQDQAREHILKAFGQAYLPKKPKIYATKNKSAQEAHEAIRPTNLDFTPEIAKN
YLKNEELKLYTLIYHRFLASQMEDAILESQSITFIGEEGEFKANGRRLLFDGFYKVLGNE
DKDKLLPELEVGAKIKPQSLEVNKHTTQPPARYSEASLIKILESLGIGRPSTYAPTIALL
NSRYYIKIENKQIHPQESAFKVIEMLENHFDKIVDATFSASLETKLDEIAENKQNWQKFL
WDFYEPFMEQINAGKTDIASQKMKIPTGEYCPQCGSELLLRESRYGEFTACGAYPKCKYI
KPQEEEGEKDPESCEKCGKPMVTKMGRNGSFLACSAYPECKNTKSLLAKPSQQKVLEGVA
CPECGGEILLRNSRRGAFYGCSNYPKCNFLSKFPPTNHKCPECNYLMNDRTYRGRAIFEC
IKCKHRVDQ
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaattgattattgtagaatctcccgcaaaggcaaagactattcagaattttttg
ggggaagaatatcaggtcatcgcctccaaaggacacatccgcgacctgccaaagatgcgg
tttggcatccatatcaaacaagagagttttgaggcaagatatgtcattgatgaggatcat
caagaaatcgccaagaatatcaaagagctagccaagcaatcctcccaggtttacattgca
accgatgaggatcgagagggtgaggcgattggctatcatatcacccaggccatagccaaa
gatccccagagcttcccgcgcatcgtctttcatgagatcacaaaaacggctatacaagat
gccctagccaatcctagaaacatcgatatgaataaagtcaatgcccagcaagctagaaga
tttctagatcgcatcgtaggctttaagctaagctccctagtttctagtaagatcgccaag
ggtcttagcgcaggaagggtgcaaagcgcagcgttaaaaatcatcattgacaaagaaaga
gagatacagaaatttatcccactggattactacagcatagaaggcaatttcctaggccta
tctgcgcagctcatcgcctatcagggcaaaaaactaaaagaacaagagattacagaggaa
gcacgtgcaaagcagatgcaagaaaacttacaaaaaaatctctacactatcggggacctg
caaaaaaaatccaaaaaatcccccacccccccgcctttcatgacctcgacattgcagcaa
agcgcttctaatttgctaggctactcgcccacaaggaccatgagcatcgcccaaaaactc
tatgaaggagtccaaacccatcagggttacatgggagtcatcacctatatgaggacagat
agcctcaatatcgcaaaaatcgcccaggaccaagcgcgcgaacacatcctcaaagcattt
gggcaggcctatctacccaaaaagcccaaaatctatgccaccaaaaacaaaagtgcccaa
gaggcccatgaagccatccgccccacaaatctagacttcactccagagattgccaaaaac
tatcttaagaatgaagaattaaagctttataccctaatctatcatcgcttccttgcctcg
caaatggaggatgcgattttagagagtcaaagcatcacctttatcggtgaagagggagag
ttcaaagccaatgggcgcagactcctttttgatggattttataaagtgcttggaaatgaa
gacaaagacaagcttttgccagaattagaggtgggcgcaaagatcaaaccacaatcccta
gaggtcaacaaacataccacacaaccccctgcccgctattcagaggcctctttgataaaa
atactagagagcctagggattgggcggcctagcacctatgcccccaccatcgccctgctc
aatagccgctactacatcaagatcgaaaacaagcaaatccatccacaagaaagtgccttc
aaggttatcgagatgctagaaaatcattttgataaaatcgtggatgcgacctttagtgct
tcattagaaactaagcttgatgagattgcagaaaataagcagaattggcaaaaattcctc
tgggatttttatgaacccttcatggagcaaatcaatgctggcaagacagacattgcctcc
caaaaaatgaaaattcccacgggcgaatactgtccacaatgtggcagcgagcttcttttg
cgcgagagccgctatggagaattcaccgcctgtggtgcctaccccaaatgcaaatacatc
aaaccccaagaagaagagggagaaaaagatcctgagtcttgtgagaaatgcggaaagccc
atggtgacaaaaatgggacgcaatggcagctttttggcctgcagtgcctacccagagtgc
aaaaacaccaaaagtctcttagccaaaccctcccagcaaaaggtgctagagggtgttgct
tgcccagaatgtggcggagagatcttgctgcgaaatagccgcaggggggcgttttatggt
tgttctaattatcctaaatgcaattttctctccaaattcccccccaccaatcacaaatgc
cctgaatgcaactatctcatgaatgatcgcacctacagaggcagggcaatttttgaatgc
atcaaatgcaaacatagggtcgatcaatga
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