Hymenobacter monticola: MTP16_02320
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Entry
MTP16_02320 CDS
T08220
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hmt
Hymenobacter monticola
Pathway
hmt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hmt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MTP16_02320 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hmt03021
]
MTP16_02320 (rpoC)
03400 DNA repair and recombination proteins [BR:
hmt03400
]
MTP16_02320 (rpoC)
Enzymes [BR:
hmt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MTP16_02320 (rpoC)
Transcription machinery [BR:
hmt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MTP16_02320 (rpoC)
DNA repair and recombination proteins [BR:
hmt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MTP16_02320 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
A_thal_3526
Motif
Other DBs
NCBI-ProteinID:
UOE34500
UniProt:
A0ABY4B645
LinkDB
All DBs
Position
complement(504293..508645)
Genome browser
AA seq
1450 aa
AA seq
DB search
MAFAKNKKVVQDFSKVTISLASPEAILERSTGEVVKPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFKSLPNKI
GYLLGLPTKKLDQIIYYERYVVVQPGTMAEEGVQQLDFMTEDEYLDVIDKLPRENQMLPN
EDPQKFIAKMGADALQMLLERINLDELSYSLRDSAAHETSQQRKAEALKRLRVVEAFRDA
ATRIENKPEWMVIRMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRAEGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKNMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDA
VVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPRLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGPAAILEASMLMLASHNILNPANGAPIAVPSQDMVLGLYYVTKGKRSTDNEKIA
GEGRVFYSDEEVVIAINEGQLSKHAFIKVRTQVRDENDDLVTKVIETVAGRVLFNQLVPT
EVGFVDELLTKKKLQQIISLVFKRTGMARTAQFLDDIKTLGFQSAYKGGLSMGLGDINIP
MEKDVLVKQAQADVAAVTQNYQMGLITDNERYNQVIDIWTRINNQITETLMGRLEKENQG
FNSIYMMMHSGARGSREQIRQLGGMRGLMAKPQKSLQGSIGEIIENPILSNFKEGLDVIE
YFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIVNEQDCGTLRGIETFALKDNEDI
VEPLSERILGRVTVHDIVDPNTNEVLLPSGSEIKEDTTRRIDVAGIESVEIRSVLTCESK
RGICAKCYGRNLASGRMVQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAVESSIK
AKFAGVVEFEDVRTVTSTDAEGRKADVVMGRSGEIRIVEKGTGRIFTSNHVPYGSFMLVK
EGQEVEKGAELNTWDPYNAVILAEFDGTVVFDAITEGITFREESDEQTGHREKVIIESKA
KDQNPSIIVRPGKKGDVEGQKGYSIPVGSHLNVENGDKITAGHILAKIPRSVGKTRDITG
GLPRVTELFEARNPSNPAVVSEIDGVVTYGTVKRGNREIFVESKDGVKKKYMVPLSKHIL
VQDNDFVRAGAPLSDGAITPSDILNIQGPGAVQEYLVNEIQEVYRLQGVKINDKHIEVVV
RQMMQKVVILDAGDTSFLENQVIDKIIFMAENDMIIDMKVVTEAGDSTNMKPGQIVTARR
LRDENSSLRRRDLALVQVRDAQPAVSRPTLQGITQASLGTASFISAASFQETTKVLSEAA
IRGKADQLLGLKENVIVGHLIPAGTGLREYTRQVVSSKEEMEAAQAAQTAEAATPAKRPS
RAGKREVSAE
NT seq
4353 nt
NT seq
+upstream
nt +downstream
nt
atggcttttgcaaaaaacaagaaagtagttcaggacttctccaaagtcaccatctcgctg
gcctcgcccgaagcaattctggagcggagcaccggcgaagtggtgaagcctgaaaccatc
aactaccgcacctacaagcccgaaatgggtggcttgttctgcgagcggattttcggtccg
gtgaaggactgggaatgccactgcggtaagtacaagcgcattcgctacaagggcatcatc
tgcgaccgttgcggcgtggaggtgactgagaagaaggtgcgtcgtgagcgcatgggccac
atcgaactggtggtgcccgtagcccacatctggtatttcaagagcctgccgaacaaaatc
ggctacctgctgggcctgcccaccaagaagctcgaccagattatctactacgagcggtac
gtagtggtgcagcccggcacgatggctgaggaaggcgtgcagcaactcgatttcatgacc
gaggacgagtacctcgacgtgattgacaagctgccccgcgaaaaccagatgctgcccaac
gaggacccgcagaagttcatcgccaagatgggtgccgacgcgctgcaaatgctgctcgag
cgcatcaacctggacgaactgagctactcgctgcgcgactccgctgcccacgaaacttcg
cagcagcgtaaggctgaggccctgaagcgtctgcgcgtggtggaagctttccgtgacgcc
gctacccgtatcgagaacaagcccgagtggatggtcatccgcatggtgccggtgattccg
ccggaactgcgccccctcgtgccgttggatggtggccgtttcgccacttccgacttgaac
gacctgtaccgtcgcgttatcattcgcaacaaccgcctcaagcgcctgattgaaatcaaa
gcgcccgaggtgattctgcggaacgagaagcgcatgctgcaagaggccgtggactcgctg
ttcgacaactcgcgtaaggtgaacgccgtgcgcgccgaaggcaaccgcgccctgaagtcg
ctgtccgacatgctgaaaggcaagcagggccgcttccgtcagaacctgctcggtaagcgt
gttgactattccggtcgttcggtaatcgtcgtaggtccggagctaaaactgcacgagtgc
ggtctgccaaagaacatggcggccgagctgttcaagccgttcatcatccgcaagctcatc
gagcgcggcatcgtgaagacggtgaagtcggccaagaagattgtggaccgcaaggacgcc
gtggtgtgggacatcttggaaaacgtgctgaaaggccacccggtgctcctcaaccgtgct
cctacgctgcaccgtctgggcatccaggcgttccagccgcgcctcattgagggcaaggct
atccagctgcacccgctcgtttgtacggccttcaacgctgactttgacggtgaccagatg
gctgtgcacgtgcccctgggcccggccgctatcctggaagcttcgatgctcatgctggcg
tcgcacaacatcctgaaccccgccaacggcgcgcccatcgcggtaccgtcgcaggacatg
gttctgggcctgtattacgtgaccaaaggcaagcgcagcactgacaatgagaaaatcgcc
ggcgaaggccgcgtgttctactccgacgaggaagtagttatcgccatcaacgaaggccag
ctctcgaagcacgctttcattaaggtgcggacccaggtacgcgacgagaacgacgacctc
gtgacgaaagtcatcgagaccgtggctggccgcgtgctgttcaaccagctggtgccgacg
gaagtgggctttgtggacgagctgttgaccaagaagaagctccagcaaatcatctcgctg
gtgttcaagcgcacgggcatggcccgcacggcgcagttcctcgatgacatcaagactcta
ggttttcagtcggcttacaaaggcggcttgagcatgggtctcggcgacatcaacatcccg
atggaaaaagacgtgctggtgaagcaagcccaggccgatgtggccgcggtgacgcagaac
taccagatgggtctgattaccgacaacgagcgttacaaccaggttatcgacatctggacg
cgcatcaacaaccagattacggaaacgttgatgggccgtctggagaaggaaaaccagggc
ttcaactccatctacatgatgatgcactcgggggcccgcggctcgcgcgagcagattcgt
cagctgggcgggatgcgtggcctgatggccaagccccagaagtcgctgcaaggctcgatt
ggcgagattatcgaaaacccgattctgtcgaacttcaaagaaggcctcgacgtaatcgag
tacttcatctcgacgcacggtgcccgtaaaggtctggccgatacagctctgaagacggct
gacgccggctacctgacccgtcgtctggtagacgtgtcgcaggacgtgattgtgaacgag
caggactgcggtaccctccgcggcatcgagaccttcgcgttgaaagacaacgaggacatt
gtggagccgctgtcggagcgcatccttggccgtgtgacggtgcacgatatcgtggacccg
aacaccaacgaagtgctgctgccctcgggctcggaaatcaaggaagacacgacgcgccgc
atcgacgtggccggtattgagtcggtggaaatccgctcggtgctgacctgcgaaagcaag
cgcggcatctgcgccaagtgctacggccgcaacctggcttcgggccgcatggtgcagcgt
ggcgaggccgtgggtgttatcgccgctcagtcgattggtgagcccggcacgcagctgacc
ctgcgtaccttccacgtaggtggtacggcttccaacatcgccgttgaatcgagcatcaaa
gccaaattcgccggtgttgttgaattcgaagatgtgcgcaccgtgacgtccaccgacgct
gaaggccgcaaggctgatgtggtgatgggccgttcgggcgaaatccgcatcgtggagaaa
ggcaccggtcgcatctttacctccaaccacgtgccctacggctcgttcatgctggtgaaa
gaaggccaggaagtggagaaaggtgccgagctgaacacctgggacccctacaacgccgta
attctggccgagttcgacggtaccgtggtgttcgacgccatcaccgaaggcatcacgttc
cgcgaggaatcggacgaacagaccggtcaccgcgagaaggtgattatcgaatcgaaggcc
aaggaccagaacccgtccatcatcgtgcgccccggcaaaaaaggcgatgtggaaggccag
aaaggctacagcatcccggtgggctcgcacttgaacgtggaaaatggtgataaaatcact
gctggtcacatcctggccaagattccgcgttcagtgggcaaaacccgcgacatcaccggt
ggtctgccgcgtgtaacggagcttttcgaagcccgcaacccgtcgaaccccgccgtggta
tcggaaatcgatggcgtggtaacctacggcaccgtgaagcggggcaaccgcgaaatcttc
gtggagtcgaaagacggcgtgaagaagaagtacatggtgccgctgtcgaagcacattctg
gtgcaggacaacgacttcgtgcgcgccggcgcgccactctctgacggtgccatcacgcct
tcggacatcctgaacattcagggccccggcgccgtgcaggagtacctcgtgaacgagatt
caggaagtgtaccgcttgcagggtgtgaaaatcaacgacaagcacatcgaggtggtcgtc
cgccagatgatgcagaaagtcgtgattctggatgccggcgacacgtcgttcctcgagaac
caggtgattgacaaaatcatcttcatggccgagaacgacatgattatcgacatgaaggtg
gtgaccgaagccggcgactcgaccaacatgaagcccggtcagattgtgacggcccgtcgc
ctccgcgacgagaacagcagcctgcgtcgccgcgaccttgccttagtgcaagtacgcgat
gcccagcccgccgtttcgcgccccacgctgcaaggcatcacgcaggcgtcgctgggtacg
gcctcgttcatctcggccgcttccttccaggaaacgaccaaggtgctgagcgaagccgcc
atccgcggcaaggccgaccagctgctgggtctgaaggagaacgtaatcgttggtcacctc
atcccggccggtactggcttgcgcgagtacacgcgtcaggtggtgagttcgaaagaggaa
atggaggctgcccaagccgcccagaccgccgaagccgccactcccgccaagcgccccagc
cgtgctggcaagcgcgaagtgtcggctgagtaa
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integrated database retrieval system
