Hymenobacter monticola: MTP16_16865
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Entry
MTP16_16865 CDS
T08220
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hmt
Hymenobacter monticola
Pathway
hmt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTP16_16865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmt03019
]
MTP16_16865
03009 Ribosome biogenesis [BR:
hmt03009
]
MTP16_16865
Enzymes [BR:
hmt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MTP16_16865
Messenger RNA biogenesis [BR:
hmt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MTP16_16865
Ribosome biogenesis [BR:
hmt03009
]
Prokaryotic type
rRNA helicases
MTP16_16865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UOE32795
UniProt:
A0ABY4B0V7
LinkDB
All DBs
Position
4082450..4084456
Genome browser
AA seq
668 aa
AA seq
DB search
MEAEKIVVRFDELNLSEEVQRAITEMGYEEASAIQAAAIPVLLSGKDVIGQAQTGTGKTA
AFSIPAIDNIDTESKDVQVLVLCPTRELAVQVSGEIQKLGKYKRGLMVVPIYGGSPYDRQ
LRALERGVQIVIGTPGRVMDHIERGTLRLDKTTKIILDEADEMLDMGFREDIEYVLSKMP
EDRQTVFFSATMSKPIMELTKKYQRDPQIVKVNHKTMTVTNIEQSYYEVRGPQKKDVLTR
LLDMYNLKSTIVFANTKRMVDEIVADLQAKGYFAEGLHGDMGQQQRQNTLDKFRKSTLEV
LVATDVAARGIDVDNVEAVVNYDLPADEEYYVHRIGRTGRAGKSGKAFTFVSGRDIYKLR
DIMRFTKADIKLAQVPSFADVSEVKTTLFLNQIKEIIEKGNLEKYVGRVQRLLDQGDEIT
SLDIAAALLKMTMKEDKSAQQSLDASKAAGTARPGYTRLFVTMGKKDRIHPRDIVDLISE
STNLTGAKVGDIALYDKFSFVEVPSEFADEIVSKLGRTSIQGSPVSFSIATPVQEGEAKQ
EGFNRGGGPGGFGGDRERRPFNGGERREGGYGGGYKGGNRGGGSFGGGERREGGYGGGYK
GNRDGGSGYGNRPSYGDRREGGTGKSGYGNRPSYGDRPSYGNKPSYGTPREYDTTRAPRA
PRNESFDE
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggaagctgaaaaaattgtggttcgctttgacgaactgaacctctccgaggaagtacaa
cgcgccatcaccgagatgggctacgaggaagcttcggccattcaggccgccgccattccc
gtgctgctgtccggcaaagacgttatcggccaggcccagacgggtaccggcaaaaccgct
gccttctccatccccgccatcgacaacatcgataccgagagcaaagacgtgcaggtattg
gtgctctgccccacccgcgaactcgcggtacaggtgtcgggcgaaatccagaaattgggc
aagtataagcgcggcctgatggtggtgcccatctacggtggcagcccctacgaccgtcag
ctccgcgccctggagcgtggcgtgcagattgtgattggcacgcccggccgggtgatggac
cacatcgagcgcggcaccctgcgcctcgataaaaccacgaaaatcatcctcgacgaagcc
gacgaaatgctcgacatgggcttccgcgaggacatcgagtacgtgctcagcaagatgccc
gaagaccgccagacggtgttcttctcggccacgatgagcaagcccatcatggagctcacc
aaaaaatatcagcgcgacccgcagattgtgaaggtgaaccataagacgatgacggttacc
aacatcgagcagagctactacgaggtgcgcggcccccagaaaaaggacgtgctgacccgt
ttgctcgacatgtacaacctgaagtcgaccatcgttttcgccaataccaagcgcatggtg
gacgaaattgttgctgacctgcaagccaaaggctacttcgccgaaggcctgcacggcgac
atgggccagcagcagcgccagaacacgctggacaaattccgcaagtcgacgctggaagtg
ctggtggctaccgacgtggccgcccgcggcatcgacgttgacaacgtggaagcggtagtg
aactacgacctgcccgccgacgaagaatactacgttcaccgcatcggccgcacgggccgc
gccggcaagtcgggcaaagccttcacgtttgtgagcggccgcgacatctacaagctgcgc
gacatcatgcgcttcaccaaggccgacatcaaattggcgcaggtgccgtcgtttgctgat
gtgtcggaggtgaaaaccacgctgttcctgaaccagattaaggaaatcatcgagaaaggc
aacctggagaaatatgtgggccgcgtgcagcgcctgctcgaccagggcgacgaaattacc
tcgctcgacatcgccgcagccctgctgaagatgacgatgaaggaggacaagagcgctcag
cagagcctcgacgccagcaaggcggccggcacggcccgccccggctacacccgcctcttc
gtgaccatgggcaagaaggaccggattcacccccgcgacatcgtggatttgatttcggaa
tcgaccaacctgaccggcgccaaagtgggcgatatcgccctctacgacaagttcagcttc
gtggaagtaccgtcggaatttgccgatgagattgtgagcaagctgggccgtaccagcatc
cagggttcgccggtgagcttcagcattgctactccggtgcaggagggcgaggccaagcag
gaaggcttcaaccgcggcggtggcccgggcggcttcggcggcgaccgtgagcgtcgtccc
ttcaacggcggcgagcgccgtgagggcggctacggcggcggctacaaaggcggcaaccgc
ggcggtggcagcttcggcggcggtgagcgccgcgaaggtggctacggcggcggctacaaa
ggcaaccgcgacggtggcagcggctacggcaaccgccccagctacggcgaccgtcgtgaa
ggcggcactggcaagtcgggctacggcaaccgcccgagctacggcgaccgtcccagctac
ggcaacaagccgagctacggcacgccccgcgagtacgatacaacccgtgccccgcgtgct
ccccgcaacgaaagcttcgacgaatag
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